A data revolution to GROW Colombia’s bioeconomy

09 October 2018

Colombia’s biodiversity is soon to be revealed in greater depth than ever before, stimulated by a new consortium that will allow the world’s second most megadiverse country to help drive the big data revolution.

The “C3Biodiversidad” consortium, created by 16 leading Colombian institutions with the support of Earlham Institute, BRIDGE Colombia, and GROW Colombia, will build capacity in research cyberinfrastructure in a country teeming with wildlife and biological information. 

A better understanding of Colombia’s biodiversity on a national scale will drive the growth of the Colombian economy. Over the next few years, enabled by the recent peace agreement, large amounts of data about the megafauna will be collected, and the capacity to share and analyse this information needs to keep pace with the vast wealth of information gleaned from these new explorations.

In June this year, Earlham Institute organised a workshop in Bogotá, Colombia, that brought together important players in the country to design a strategy to develop research cyberinfrastructure that can cope with these needs.

Colombia is a country of stunning beauty and megadiversity; geographically, culturally and biologically. A greater understanding of this biodiversity is not only key to conserving and promoting it, but can also drive economic growth, social equality and a sustainable peace in Colombia, especially now that the FARC rebels have put down their weapons.

Professor Federica Di Palma, coordinator of the BRIDGE Network and EI’s Director of Science, said: “The potential for data to transform how we tackle many of the major challenges faced by humanity, from climate change and environmental sustainability to conservation and food security, is huge. This can only be achieved through greater access to data, enabled through effective and efficient infrastructures - ensuring that we are harnessing the best expertise from all around the world to work on these grand challenges.”

Prof Silvia Restrepo-Restrepo, VC of Research at University of Los Andes, added: “Genomics allows us to understand the potential of this diversity in a more effective, efficient and fast way, in order to move from an economy that relies on non-renewable energy sources to a knowledge-based one. This partnership will catalyze Colombia’s transformation.”

One way of ensuring the efficient and accurate analysis of such abundant data is to cultivate and foster research cyberinfrastructure - advanced shared computing resources along with a community of skilled people who ensure that they are operated in a sustainable, secure, collaborative, and interoperable way.

Colombia is the number one hotspot for orchid, bird and amphibian diversity worldwide, with vast regions yet to explore - an “environmental powerhouse.” However, exploring and investigating the swathe of information contained within each of the thousands of species of these organisms, especially with the advent of modern life sciences methods, starts to stretch the capacity of single research groups.

Dr Jose De Vega, Research Fellow at EI who organised the workshop, added: “The main goal of a research cyberinfrastructure is to enable data-driven scientific discovery. Essentially, a research cyberinfrastructure aims to meet the needs of the life science community through democratised access to computational resources, particularly supporting international collaborations flexibly across multiple institutes.”

Dr Rob Davey, Head of Research e-Infrastructure at EI, added: “The way researchers interact with computational resources is changing. Whilst institutional high performance computing is still a necessity, the internet and cloud computing is a potentially disruptive model to the “servers under desks” mentality that has been prevalent up until now. Cyberinfrastructure brings new opportunities and abilities to analyse and share data, but without common infrastructure building blocks it is difficult to make the available resources greater than the sum of their parts.”

Dr Romain Guyot, from Autonomous University of Manizales, added: “In my opinion, it is important to change our way of thinking. Scientists often believe that it is better to work on their own on research projects, but there are many examples showing the benefits of working together.”

As its first initiative, C3Biodiversidad is producing a technical white paper to inform research policy among policy-makers as well as scientific materials to disseminate the consortium mission, while engaging with a diversity of stakeholders in Colombia and the wider region.

Prof Emiliano Barreto, from the Bioinformatics Centre at National University of Colombia, added: “The consortium aims at integrating the data collected at the national level, making it available to all the different players and having the necessary computational capacity to analyze and keep it updated, in such a way that the country and the world knows what and where these natural resources are, as well as the access requirements in our country.” 

Notes to editors

For more information, please contact:

Hayley London

Marketing & Communications Officer, Earlham Institute (EI)

  • +44 (0)1603 450 107

hayley.london@earlham.ac.uk

GROW Colombia
A recent award from RCUK’s Global Challenges Research Fund is set to stimulate the bioeconomy by increasing knowledge of Colombia’s greatest treasure, its biodiversity, following the peace agreement. This project, “GROW Colombia”, aims for research excellence through promoting innovative technologies, developing resilient research capabilities, building partnerships, and fostering best practice in knowledge exchange, with longer-term goals to stimulate economic and social growth. UK-based researchers are working with Colombian researchers, industry partners and crop breeders to study the genetic diversity within the country’s unique biodiversity, documenting its distribution and the threats it faces, as well as to gain the skills needed to drive sustainable innovation and to attract further public and private funding.

BRIDGE Colombia
The BRIDGE Colombia network (www.bridgecolombia.org) is a multidisciplinary network of research organisations in the UK and Colombia founded in March 2017, focused on the development of robust coordinated activities under a shared vision centered on biodiversity as a means to achieve sustainability and peace. “GROW Colombia” sits alongside the BRIDGE Colombia network. The network actively facilitates collaborative and fully integrated research programmes; promotes research excellence and the use of innovation in technologies and approaches to develop resilience in research capabilities; stimulates partnerships; and promotes exchange of knowledge.

C3Biodiversidad
The Consorcio Colombiano de Ciberinfraestructura para la Biodiversidad (Colombian Cyberinfrastructure Consortium for Biodiversity) is open to stakeholders interested in developing a research cyberinfrastructure in Colombia. It was created on 28 June 2018, in Bogotá, by a cohort of experts in the field following an declaration where they agreed to produce a series of outcomes with the overarching objective of “producing the indispensable knowledge about the natural and agricultural biodiversity in Colombia” in order to “drive the growth of a bioeconomy in Colombia”.

The Earlham Institute (EI) is a world-leading research Institute focusing on the development of genomics and computational biology. EI is based within the Norwich Research Park and is one of eight institutes that receive strategic funding from Biotechnology and Biological Science Research Council (BBSRC) - £5.43m in 2017/18 - as well as support from other research funders. - as well as support from other research funders. EI operates a National Capability to promote the application of genomics and bioinformatics to advance bioscience research and innovation.

EI offers a state of the art DNA sequencing facility, unique by its operation of multiple complementary technologies for data generation. The Institute is a UK hub for innovative bioinformatics through research, analysis and interpretation of multiple, complex data sets. It hosts one of the largest computing hardware facilities dedicated to life science research in Europe. It is also actively involved in developing novel platforms to provide access to computational tools and processing capacity for multiple academic and industrial users and promoting applications of computational Bioscience. Additionally, the Institute offers a training programme through courses and workshops, and an outreach programme targeting key stakeholders, and wider public audiences through dialogue and science communication activities.

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