Circadian rhythms in plants
Applying imaging techniques, transcriptomics and machine learning to explore circadian rhythms in a range of plant systems
Biography
As a CASE PhD student at Earlham Institute, in collaboration with Sygenta, I am using machine learning and deep learning techniques to improve on the analysis framework for SeedGerm. Using convolutional neural networks, a novel solution will be developed that will allow a wide variety of seeds to be analysed by SeedGerm.
Prior to joining Earlham Institute, I was awarded a BSc (Hons) in Mathematics and Statistics from the University of York. It was during my undergraduate degree that I discovered an interest in machine learning and the combination of programming and statistics. I completed a summer internship at the Quadram Institute where I was optimising parameters that would be used in a linear regression model.
Publications
Related reading.
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12 June 2023
Comment
Science
FEATURE
| 5 min READ
Single cells offering limitless potential
Revolutionary techniques to extract and sequence the genetic material of a single cell are allowing scientists to begin to answer fundamental questions.
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05 June 2023
Science
FEATURE
| 10 min READ
Cellular Genomics: understanding why being different is normal
What does a “healthy” or “normal” cell look like?
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22 May 2023
Science
FEATURE
Bananas are on the brink but close cousins could save their skins
With the growing spread of a new strain of Panama disease, which is devastating banana crops, there is an urgent need to boost their resilience - and potentially apply the same approach to protect other vulnerable crops.
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10 May 2023
Science
FEATURE
| 8 min READ
Cultural differences: how analysing mixed communities of microorganisms could help us understand AMR
Microbes don’t live in single-strain groups – they mingle. Antimicrobial resistance can be passed between strains as well as within them. What does this mean for the future of single-cell sequencing and the fight against AMR?
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24 April 2023
People
Science
FEATURE
| 8 min READ
Memories of sequencing the human genome to mark seven decades of DNA
It’s one of the most recognisable images on the planet - two lines circling each other, joined in the middle by slim rungs.
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17 April 2023
People
Science
FEATURE
| 3 min READ
Hidden jewels in our blood could hold secrets of healthy ageing
They are so small they can barely be seen under a microscope, but platelets play an essential role in repair and defence of our bodies.
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30 March 2023
Science
Technology
FEATURE
Differences make a difference: from one cell to a world of individuality
In our last article, we explored how low-level exposure to antibiotics in the environment is affecting the emergence of resistance genes in Salmonella. Here, we explore how single-cell genomics can elevate our understanding of how AMR arises - and equip us with the knowledge to tackle this existential threat.
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08 March 2023
People
Science
FEATURE
| 5 min READ
Artificial realities: copying wild microbial communities in the lab
When we think of the plant microbiota, we tend to think in terms of how they interact with their host. But they also have complex give-and-take relationships with each other.
10 April 2023
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Engineered plants produce sex perfume to trick pests and replace pesticides
Tobacco plants have been engineered to manufacture an alluring perfume of insect sex pheromones, which could be used to confuse would-be pests looking for love and reduce the need for harmful pesticides.
28 March 2023
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Human body a breeding ground for antimicrobial resistance genes
The community of microbes living in and on our bodies may be acting as a reservoir for antibiotic resistance, according to new research from the Earlham Institute and Quadram Institute in Norwich.
06 February 2023
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Key tilapia genome offers boost to global food security
The first full, high-quality reference genome for a genetically improved tilapia strain has been published, offering the potential to improve food security for billions of the world’s poorest people.
10 January 2023
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Exotic wheat DNA could help breed ‘climate-proof’ crops
Wheat containing exotic DNA from wild relatives benefits from up to 50 per cent higher yields in hot weather compared with elite lines lacking these genes.
22 November 2022
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Sequencing project to unleash the huge potential of euglenoids
An ambitious plan to sequence the genomes of all known species of euglenoids over the next decade has been launched today.
24 October 2022
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Circadian clock insights could be key to increased wheat yields
New research carefully measuring the influence and regulation of the circadian clock in wheat could help breeders improve key agricultural traits in one of the world’s most important crops.
28 September 2022
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European consortium launched to reverse biodiversity loss through genomics research
A quantum leap in the use of genomics is needed to reverse unprecedented species loss and ecosystem degradation, according to a new pan-European consortium of leading research organisations.
22 September 2022
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Tracking bacterial evolution in real time spots emergence of antimicrobial resistance
Single-cell genomics technology could transform understanding of how bacterial populations evolve and combat the growing issue of antibiotic resistance