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Xingdong Bian

Research Software Engineer

Davey Group

Biography.

Contact details:

  • +44 (0) 1603 450 216

xingdong.bian@earlham.ac.uk

Xingdong joined the Earlham Institute in January 2010 and was involved in the development of EI's Laboratory Information Management System (MISO) and the TGAC Genomic Browser. He also worked on data visualisation, managing servers, genomic databases and bioinformatics tools.

Xingdong is now a Research Software Engineer for developing Grassroots Infrastructure (link: http://grassroots.tools) which contributes to Wheat Information System for wheat researches.

Projects.

Green fields of wheat

Grassroots Genomics

Publications.

Jun 2019

Thanki A., Bian X., Davey R.

TGAC Browser: an open-source genome browser for non-model organisms

bioRxiv

Publishers version: doi:10.1101/677658

Jun 2016

Wilkinson P. A., Winfield M. O., Barker G. L., Tyrrell S., Bian X., Allen A. M., Burridge A., Coghill J. A., Waterfall C., Caccamo M., Davey R. P., Edwards K. J.

CerealsDB 3.0: expansion of resources and data integration.

BMC Bioinformatics

Publishers version: doi:10.1186/s12859-016-1139-x

Related reading.

Bread and butter: decoding wheat

  • 12 August 2019
  • CSP

Tick tock circadian clock

  • 08 July 2019
  • CSP

10 years of impact: global food security

  • 07 May 2019
  • CSP

The twelve polyploids of Christmas

  • 20 December 2018
  • CSP

PhD by experience

  • 01 October 2018
  • Learning

Day in the life of … a wheat bioinformatician on her own research path

  • 18 July 2018
  • Learning

Wheat Side Story

  • 11 August 2016
  • Science

Sticky seeds and selective breeding: The cradle of civilisation

  • 14 June 2016
  • Science

New wheat varieties: why is mapping essential?

  • 19 February 2016
  • Science

A big data cyberinfrastructure to keep pace with Colombia’s natural capital

  • 16 January 2020

Diagnosing infections earlier in preterm babies with real time genomic analysis

  • 16 December 2019

Gut feeling: a network approach towards understanding IBD

  • 10 December 2019

Discovering hidden plant medicines on your doorstep

  • 26 November 2019

Salmonella - how the body fights back

  • 14 November 2019

Earlham Institute takes part in ambitious 'Tree of Knowledge' to map the genomes of all life in UK

  • 08 November 2019

Major funding boost for bioscientists of the future

  • 25 October 2019

How to innovate with EI: applying genomics to the real world

  • 16 October 2019

Science building a BRIDGE between Colombia and UK

  • 30 September 2019

Protecting biodiversity in Colombia: former guerrilla fighters becoming citizen scientists

  • 13 August 2019

Ash dieback evolution and population genomics

Multi-omics analysis of Inflammatory Bowel Disease patients

Machine learning and systems biology approaches to study the gut microbiome

How the microbiome keeps us healthy

Ship-seq: Nanopore sequencing of polar microbes on board research vessels

Tackling the complex regulation of individual intestinal cells

Data lake approaches for storing and processing Big Data in biology

Nanopore sequencing for interactive, real-time metagenomics

ELIXIR-UK