NanoOK RT

NanoOK

NanoOK RT is a tool for real-time species classification and antimicrobial resistance identification from nanopore sequencing data.

It is built as an extension to the NanoOK tool, which began as a tool to provide comprehensive alignment-based analysis of nanopore sequence data. A separate tool, NanoOK Reporter, allows visualisation of analysis as sequencing proceeds.

Paper

NanoOK RT article preprint:

Rapid MinION metagenomic profiling of the preterm infant gut microbiota to aid in pathogen diagnostics

Leggett R.M., Alcon-Giner C., Heavens D., Caim S., Brook T.C., Kujawska, M., Hoyles, L., Clarke P., Hall L., Clark, M. (2017).

GitHub code

NanoOK RT

Documentation link

https://nanook.readthedocs.io/en/latest/nanookrt.html