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Sep 2021

Dudley QM,Cai Y,Kallam K,Debreyne H,Carrasco Lopez J,Patron NJ

Biofoundry-Assisted Expression and Characterisation of Plant Proteins

Synthetic Biology

Publishers version: doi:10.1093/synbio/ysab029

Sep 2021

Martin K,Schmidt K,Toseland A,Boulton CA,Barry K,Beszteri B,Brussaard CPD,Clum A,Daum CG,Eloe-Fadrosh E,Fong A,Foster B,Foster B,Ginzburg M,Huntemann M,Ivanova NN,Kyrpides NC,Lindquist E,Mukherjee S,Palaniappan K,Reddy TBK,Rizkallah MR,Roux S,Timmermans K,Tringe SG,van de,Varghese N,Valentin KU,Lenton TM,Grigoriev IV,Leggett RM,Moulton V,Mock T

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.

Nature communications

Publishers version: doi:10.1038/s41467-021-25646-9

Aug 2021

Dudley QM,Jo J,Serna Guerrero DA,O'Connor S,Caputi L,Patron NJ

Reconstitution of monoterpene indole alkaloid biosynthesis inNicotiana benthamiana

bioRxiv

Publishers version: doi:10.1101/2021.08.12.456143

Aug 2021

Higgins J.,Santos B.,Khanh T.D.,Trung K.H.,Duong T.D.,Doai N.T.P.,Hall A.,Dyer S.,Caccamo M.,De Vega J

Identifying genomic regions and candidate genes selected during the breeding of rice in Vietnam

bioRxiv

Publishers version: doi:0.1101/2021.08.04.455072

Jul 2021

Martin S,Ayling M,Patrono L,Caccamo M,Murcia P,Leggett R

Capturing variation in metagenomic assembly graphs with MetaCortex

bioRxiv

Publishers version: doi:10.1101/2021.07.23.453484

Jul 2021

Higgins J.,Tomaszewska P.,Pellny T.,Castiblanco V.,Arango J.,Tohme J.,Schwarzacher T.,Mitchell R.,Heslop-Harrison J.,De Vega J

The five Urochloa spp. used in development of tropical forage cultivars originate from defined subpopulations with differentiated gene pools

bioRxiv

Publishers version: doi:10.1101/2021.07.21.453213

Jul 2021

Quince C,Nurk S,Raguideau S,James R,Soyer OS,Summers JK,Limasset A,Eren AM,Chikhi R,Darling AE

STRONG: metagenomics strain resolution on assembly graphs.

Genome biology

Publishers version: doi:10.1186/s13059-021-02419-7

Jul 2021

Hall N

Inter-kingdom relationships in Crohn's disease explored using a multi-omics approach

Gut Microbes

Publishers version: doi:10.1080/19490976.2021.1930871

Jun 2021

Huws SA,Edwards JE,Lin W,Rubino F,Alston M,Swarbreck D,Caim S,Stevens PR,Pachebat J,Won MY,Oyama LB,Creevey CJ,Kingston-Smith AH

Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches.

Microbiome

Publishers version: doi:10.1186/s40168-021-01087-w

Jun 2021

Higgins J,Santos B,Khanh TD,Trung KH,Duong TD,Doai NTP,Khoa NT,Ha DTT,Diep NT,Dung KT,Phi CN,Thuy TT,Tuan NT,Tran HD,Trung NT,Giang HT,Nhung TK,Tran CD,Lang SV,Nghia T,Van Giang,Xuan TD,Hall A,Dyer S,Ham LH,Caccamo M,De Vega

Resequencing of 672 Native Rice Accessions to Explore Genetic Diversity and Trait Associations in Vietnam.

Rice (New York, N.Y.)

Publishers version: doi:10.1186/s12284-021-00481-0

May 2021

Martin S,Heavens D,Lan Y,Horsfield S,Clark M,Leggett R

Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples

bioRxiv

Publishers version: doi:10.1101/2021.05.07.443191

May 2021

Li Y,Leveau A,Zhao Q,Feng Q,Lu H,Miao J,Xue Z,Martin AC,Wegel E,Wang J,Orme A,Rey MD,Karafiátová M,Vrána J,Steuernagel B,Joynson R,Owen C,Reed J,Louveau T,Stephenson MJ,Zhang L,Huang X,Huang T,Fan D,Zhou C,Tian Q,Li W,Lu Y,Chen J,Zhao Y,Lu Y,Zhu C,Liu Z,Polturak G,Casson R,Hill L,Moore G,Melton R,Hall N,Wulff BBH,Doleel J,Langdon T,Han B,Osbourn A

Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals.

Nature Communications

Publishers version: doi:10.1038/s41467-021-22920-8

May 2021

Hall N

Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals

Nature Communications

Publishers version: doi:https://doi.org/10.1038/s41467-021-22920-8

Apr 2021

Concia L,Veluchamy A, Ramirez-Prado JS,Martin-Ramirez A,Huang Y,Perez M,Domenichini S,Rodriguez Granados NY,Kim S,Blein T,Duncan S, Pichot C, Manza-Mianza C, Juery C,Paux E, Moore G, Hirt H,Bergounioux C,Crespi M,Mahfouz M,Bendahmane A,Liu C,Hall A,Raynaud C,Latrasse D,Benhamed M

Wheat chromatin architecture is organized in genome territories and transcription factories

Genome Biology

Publishers version: doi:10.1186/s13059-020-01998-1

Apr 2021

Wright D,Hall N,Irish N,Man A,Glynn W,Mould A,De Los Angeles A,Angiolini E,Swarbreck D,Gharbi K,Tunbride E,Haerty W

Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes

biorXiv

Publishers version: doi:10.1101/2021.04.27.441628