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Jul 2020

Kiu R,Treveil A,Harnisch L,Caim S,Leclaire C,van Sinderen D,Korcsmaros T,Hall L

Bifidobacterium breve UCC2003 Induces a Distinct Global Transcriptomic Program in Neonatal Murine Intestinal Epithelial Cells.

iScience

Publishers version: doi:10.1016/j.isci.2020.101336

Jul 2020

Colmer J,O'Neill CM,Wells R,Bostrom A,Reynolds D,Websdale D,Shiralagi G,Lu W,Lou Q,Le Cornu,Ball J,Renema J,Flores Andaluz,Benjamins R,Penfield S,Zhou J

SeedGerm: a cost-effective phenotyping platform for automated seed imaging and machine-learning based phenotypic analysis of crop seed germination.

Publishers version: doi:10.1111/nph.16736

Jul 2020

Khumsupan P,Kozlowska MA,Orr JA,Andreou AI,Nakayama N,Patron NJ,Carmo-Silva E,McCormick AJ

Generating and characterising single- and multi-gene mutants of the Rubisco small subunit family in Arabidopsis

Journal of Experimental Botany

Publishers version: doi:10.1093/jxb/eraa316

Jul 2020

Frioux C. F., Singh D. S., Korcsmaros T. K., Hildebrand F. H.

From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes

Computational and Structural Biotechnology Journal

Publishers version: doi:NA

Jun 2020

Chen Y,Singh A,Kaithakottil GG,Mathers TC,Gravino M,Mugford ST,van Oosterhout,Swarbreck D,Hogenhout SA

An aphid RNA transcript migrates systemically within plants and is a virulence factor.

Proceedings of the National Academy of Sciences of the United States of America

Publishers version: doi:10.1073/pnas.1918410117

May 2020

Kemp L., Adam L., Boehm C. R., Breitling R., Casagrande R., Dando M., Djikeng A., Evans N. G., Hammond R., Hills K., Holt L. A., Kuiken T., Markotić A., Millett P., Napier J. A., Nelson C., ÓHÉIgeartaigh S., Osbourn A., Palmer M. J., Patron N. J., Perello E., Piyawattanametha W., Restrepo-Schild V., Rios-Rojas C., Rhodes C., Roessing A., Scott D., Shapira P., Simuntala C., Smith R. D. J., Sundaram L. S., Takano E., Uttmark G., Wintle B. C., Zahra N. B., Sutherland W. J.

­Bioengineering Horizon Scan 2020

eLife

Publishers version: doi:10.7554/eLife.54489

May 2020

Andrighetti T., Bohar B., Lemke N., Sudhakar P., Korcsmaros T.

MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome-Host Interactions.

Cells

Publishers version: doi:10.3390/cells9051278

May 2020

Cai Y., Kallam K., Tidd H., Gendarini G., Salzman A., Patron N. J.

Rational Design of Minimal Synthetic Promoters for Plants

biorxiv.org

Publishers version: doi:10.1101/2020.05.14.095406

May 2020

Jones C., De Vega J., Lloyd D., Hegarty M., Ayling S., Powell W., Skøt L.

Population structure and genetic diversity in red clover (Trifolium pratense L.) germplasm.

Scientific reports

Publishers version: doi:10.1038/s41598-020-64989-z

Apr 2020

Concia L,Veluchamy A,Ramirez-Prado JS,Martin-Ramirez A,Huang Y,Perez M,Domenichini S,Rodriguez Granados,Kim S,Blein T,Duncan S,Pichot C,Manza-Mianza D,Juery C,Paux E,Moore G,Hirt H,Bergounioux C,Crespi M,Mahfouz MM,Bendahmane A,Liu C,Hall A,Raynaud C,Latrasse D,Benhamed M

Wheat chromatin architecture is organized in genome territories and transcription factories.

Genome biology

Publishers version: doi:10.1186/s13059-020-01998-1

Apr 2020

Emmrich P. M. F., Sarkar A., Njaci I., Kaithakottil G. G., Ellis T. H. N., Moore C., Edwards A., Heavens D., Waite D., Cheema J., Trick M., Moore J., Webb A., Calazzo R., Thomas J., Higgins J., Swarbreck D., Kumar S., Mundree S., Loose M., Yant L., Martin C., Wang T. L.

A draft genome sequence of grass pea (Lathyrus sativus), a resilient diploid legume

https://biorxiv.org/cgi/content/short/2020.04.24.058164v1

Publishers version: doi:10.1101/2020.04.24.0581

Apr 2020

Bahram M., Netherway T., Hildebrand F., Pritsch K., Drenkhan R., Loit K., Anslan S., Bork P., Tedersoo L.

Plant nutrient-acquisition strategies drive topsoil microbiome structure and function.

New Phytologist

Publishers version: doi:10.1111/nph.16598

Apr 2020

Patron N. J.

Beyond natural: synthetic expansions of botanical form and function.

New Phytologist

Publishers version: doi:10.1111/nph.16562

Apr 2020

Schreiber M., Mascher M., Wright J., Padmarasu S., Himmelbach A., Heavens D., Milne L., Clavijo B. J., Stein N., Waugh R.

A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise.

G3 (Bethesda, Md.)

Publishers version: doi:10.1534/g3.119.401010

Apr 2020

Thanki A., Davey R., Haerty W.

Development of computational techniques for genomic data analysis and visualisation in model and non-model organisms

Publishers version: doi: