Publications.

May 2021

Martin S,Heavens D,Lan Y,Horsfield S,Clark M,Leggett R

Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples

bioRxiv

Publishers version: doi:10.1101/2021.05.07.443191

May 2021

Li Y,Leveau A,Zhao Q,Feng Q,Lu H,Miao J,Xue Z,Martin AC,Wegel E,Wang J,Orme A,Rey MD,Karafiátová M,Vrána J,Steuernagel B,Joynson R,Owen C,Reed J,Louveau T,Stephenson MJ,Zhang L,Huang X,Huang T,Fan D,Zhou C,Tian Q,Li W,Lu Y,Chen J,Zhao Y,Lu Y,Zhu C,Liu Z,Polturak G,Casson R,Hill L,Moore G,Melton R,Hall N,Wulff BBH,Doleel J,Langdon T,Han B,Osbourn A

Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals.

Nature Communications

Publishers version: doi:10.1038/s41467-021-22920-8

Apr 2021

Concia L,Veluchamy A, Ramirez-Prado JS,Martin-Ramirez A,Huang Y,Perez M,Domenichini S,Rodriguez Granados NY,Kim S,Blein T,Duncan S, Pichot C, Manza-Mianza C, Juery C,Paux E, Moore G, Hirt H,Bergounioux C,Crespi M,Mahfouz M,Bendahmane A,Liu C,Hall A,Raynaud C,Latrasse D,Benhamed M

Wheat chromatin architecture is organized in genome territories and transcription factories

Genome Biology

Publishers version: doi:10.1186/s13059-020-01998-1

Apr 2021

Wright D,Hall N,Irish N,Man A,Glynn W,Mould A,De Los Angeles A,Angiolini E,Swarbreck D,Gharbi K,Tunbride E,Haerty W

Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes

biorXiv

Publishers version: doi:10.1101/2021.04.27.441628

Apr 2021

Angiolini EMILY,Sandovici IONEL,Coan PHIL,Burton GRAHAM,Sibley COLIN,Fowden ABIGAIL,Constancia MIGUEL

Deletion of the Imprinted Phlda2 Gene Increases Placental Passive Permeability in the Mouse

Genes

Publishers version: doi:10.3390/genes12050639

Apr 2021

De Vega J,Peel N,Purdy SJ,Hawkins S,Donnison L,Dyer S,Farrar K

Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids.

Biotechnology for biofuels

Publishers version: doi:10.1186/s13068-021-01948-4

Apr 2021

Batut B,Van den Beek M,Doyle MA,Picardi E

RNA-Seq Data Analysis in Galaxy

Publishers version: doi:10.1007/978-1-0716-1307-8_20

Apr 2021

Berger Gillam T,Cole J,Gharbi K,Angiolini E,Barker T,Bickerton P,Brabbs T,Chin J,Coen E,Cossey S,Davey R,Davidson R,Durrant A,Edwards D,Hall N,Henderson S,Hitchcock M,Irish N,Lipscombe J,Jones G,Parr G,Rushworth S,Shearer N,Smith R,Steel N

Norwich COVID-19 testing initiative pilot: evaluating the feasibility of asymptomatic testing on a university campus

Journal of public health (Oxford, England)

Publishers version: doi:10.1093/pubmed/fdaa194

Mar 2021

Ciezarek A,Ford A,Etherington G,Kasozi N,Malinsky M,Mehta T,Penso-Dolfin n L,Ngatunga BP,Shechonge A,Tamatamah R,Haerty W,Di Palma F,Genner MJ,Turner GF

Whole genome resequencing data enables a targeted SNP panel for conservation and aquaculture of Oreochromis cichlid fishes

biorxiv

Publishers version: doi:https://doi.org/10.1101/2021.03.24.436760

Mar 2021

Kapuy O,Holczer M,Marton M,Korcsmaros T

Autophagy-dependent survival is controlled with a unique regulatory network upon various cellular stress events

Cell Death & Disease

Publishers version: doi:10.1038/s41419-021-03599-7

Mar 2021

Turei D,Valdeolivas A,Gul L,Palacio-Escat N,Klein M,Ivanova O,Olbei M,Gabor A,Theis F,Modos D,Korcsmaros T,Saez-Rodriguez J

Integrated intra- and intercellular signaling knowledge for multicellular omics analysis

Molecular Systems Biology

Publishers version: doi:10.15252/msb.20209923

Mar 2021

Jones C,De Vega J,Worthington M,Thomas A,Gasior D,Harper J,Doonan J,Fu Y,Bosch M,Corke F,Arango J,Cardoso JA,de la,Armstead I,Fernandez-Fuentes N

A Comparison of Differential Gene Expression in Response to the Onset of Water Stress Between Three Hybrid Brachiaria Genotypes.

Frontiers in plant science

Publishers version: doi:10.3389/fpls.2021.637956

Mar 2021

Rabanus-Wallace MT,Hackauf B,Mascher M,Lux T,Wicker T,Gundlach H,Baez M,Houben A,Mayer KFX,Guo L,Poland J,Pozniak CJ,Walkowiak S,Melonek J,Praz CR,Schreiber M,Budak H,Heuberger M,Steuernagel B,Wulff B,Börner A,Byrns B,Cíková J,Fowler DB,Fritz A,Himmelbach A,Kaithakottil G,Keilwagen J,Keller B,Konkin D,Larsen J,Li Q,Mysków B,Padmarasu S,Rawat N,Sesiz U,Biyiklioglu-Kaya S,Sharpe A,imková H,Small I,Swarbreck D,Toegelová H,Tsvetkova N,Voylokov AV,Vrána J,Bauer E,Bolibok-Bragoszewska H,Doleel J,Hall A,Jia J,Korzun V,Laroche A,Ma XF,Ordon F,Özkan H,Rakoczy-Trojanowska M,Scholz U,Schulman AH,Siekmann D,Stojalowski S,Tiwari VK,Spannagl M,Stein N

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential.

Nature genetics

Publishers version: doi:10.1038/s41588-021-00807-0

Mar 2021

Rosario D,Bidkhori G,Lee S,Bedarf J,Hildebrand F,Le Chatelier,Uhlen M,Ehrlich SD,Proctor G,Wüllner U,Mardinoglu A,Shoaie S

Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson's disease.

Cell reports

Publishers version: doi:10.1016/j.celrep.2021.108807

Mar 2021

Rees H,Joynson R,Brown JKM,Hall A

Naturally occurring circadian rhythm variation associated with clock gene loci in Swedish Arabidopsis accessions.

Plant, cell & environment

Publishers version: doi:https://doi.org/10.1111/pce.13941