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Aug 2019

Gaimster H., Hews C. L., Griffiths R., Soriano-Laguna M. J., Alston M., Richardson D. J., Gates A. J., Rowley G.

A Central Small RNA Regulatory Circuit Controlling Bacterial Denitrification and N2O Emissions.

mBio

Publishers version: doi:10.1128/mBio.01165-19

Aug 2019

Peel N., Dicks L. V., Clark M. D., Heavens D., Percival‐Alwyn L., Cooper C., Davies R. G., Leggett R. M., Yu D.

Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet)

Methods in Ecology and Evolution

Publishers version: doi:10.1111/2041-210X.13265

Jul 2019

Alkhudaydi T., Reynolds D., Griffiths S., Zhou J., De La Iglesia B.

An Exploration of Deep-Learning Based Phenotypic Analysis to Detect Spike Regions in Field Conditions for UK Bread Wheat

Plant Phenomics

Publishers version: doi:10.34133/2019/7368761

Jul 2019

Charalampous T., Kay G. L., Richardson H., Aydin A., Baldan R., Jeanes C., Rae D., Grundy S., Turner D. J., Wain J., Leggett R., Livermore D. M., O'Grady J.

Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection.

Nature Biotechnology

Publishers version: doi:10.1038/s41587-019-0156-5

Jun 2019

Martin S., Leggett R.

Alvis: a tool for contig and read ALignment VISualisation and chimera detection

bioRxiv

Publishers version: doi:10.1101/663401

Jun 2019

Bauer A., Bostrom A., Ball J., Applegate C., Cheng T., Laycock S., Moreno Rojas S., Kirwan J., Zhou J.

Combining computer vision and deep learning to enable ultra-scale aerial phenotyping and precision agriculture: A case study of lettuce production.

Horticulture research

Publishers version: doi:10.1038/s41438-019-0151-5

May 2019

Reynolds D., Baret F., Welcker C., Bostrom A., Ball J., Cellini F., Lorence A., Chawade A., Khafif M., Noshita K., Mueller-Linow M., Zhou J., Tardieu F.

What is cost-efficient phenotyping? Optimizing costs for different scenarios

Plant Science

Publishers version: doi:10.1016/j.plantsci.2018.06.015

May 2019

Sirey T. M., Roberts K., Haerty W., Bedoya-Reina O., Rogatti-Granados S., Tan J. Y., Li N., Heather L. C., Carter R. N., Finch A. J., Morton N. M., Marques A. C., Ponting C. P.

The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity

eLife

Publishers version: doi:10.7554/eLife.45051

May 2019

Hillson N., Caddick M., Cai Y., Carrasco J. A., Chang M. W., Curach N. C., Bell D. J., Le Feuvre R., Friedman D. C., Fu X., Gold N. D., Herrgård M. J., Holowko M. B., Johnson J. R., Johnson R. A., Keasling J. D., Kitney R. I., Kondo A., Liu C., Martin V. J. J., Menolascina F., Ogino C., Patron N. J., Pavan M., Poh C. L., Pretorius I. S., Rosser S. J., Scrutton N. S., Storch M., Tekotte H., Travnik E., Vickers C. E., Yew W. S., Yuan Y., Zhao H., Freemont P. S.

Building a global alliance of biofoundries.

Nature communications

Publishers version: doi:10.1038/s41467-019-10079-2

Apr 2019

Tuncel A., Corbin K. R., Ahn-Jarvis J., Harris S., Hawkins E., Smedley M. A., Harwood W., Warren F. J., Patron N. J., Smith A. M.

Cas9-mediated mutagenesis of potato starch branching enzymes generates a range of tuber starch phenotypes.

Plant Biotechnology Journal

Publishers version: doi:10.1111/pbi.13137

Apr 2019

Nash W., Mohorianu I., Chapman T.

Mate choice and gene expression signatures associated with nutritional adaptation in the medfly (Ceratitis capitata).

Scientific reports

Publishers version: doi:10.1038/s41598-019-42610-2

Apr 2019

Pollak B., Cerda A., Delmans M., Álamos S., Moyano T., West A., Gutiérrez R. A., Patron N., Federici F., Haseloff J.

Loop assembly: a simple and open system for recursive fabrication of DNA circuits.

New Phytologist

Publishers version: doi:10.1111/nph.15625

Mar 2019

Hooson J., Warthon Medina M., Finglas P. M., Et Al E. T.

A systematic review of reviews identifying UK validated dietary assessment tools for inclusion on an interactive guided website for researchers: www.nutritools.org

Critical Reviews in Food Science and Nutrition

Publishers version: doi:10.1080/10408398.2019.1566207

Feb 2019

Raitskin O., Schudoma C., West A., Patron N. J.

Comparison of efficiency and specificity of CRISPR-associated (Cas) nucleases in plants: An expanded toolkit for precision genome engineering.

PLoS ONE

Publishers version: doi:10.1371/journal.pone.0211598

Feb 2019

Jones E., Matthews Z., Gul L., Sudhakar P., Treveil A., Divekar D., Buck J., Wrzesinski T., Jefferson M., Armstrong S., Hall L., Watson A., Carding S., Haerty W., Di Palma F., Mayer U., Powell P., Hautefort I., Wileman T., Korcsmaros T.

Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy

Disease Models and Mechanisms

Publishers version: doi:10.1242/dmm.037069