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Jan 2021

Kemp L,Aldridge DC,Booy O,Bower H,Browne D,Burgmann M,Burt A,Cunningham AA,Dando M,Dick JTA,Dye C,Weiss Evans,Gallardo B,Godfray HCJ,Goodfellow I,Gubbins S,Holt LA,Jones KE,Kandil H,Martin P,McCaughan M,McLeish C,Meany T,Millett K,ÓhÉigeartaigh SS,Patron NJ,Rhodes C,Roy HE,Shackelford G,Smith D,Spence N,Steiner H,Sundaram LS,Voeneky S,Walker JR,Watkins H,Whitby S,Wood J,Sutherland WJ

80 questions for UK biological security.

PloS one

Publishers version: doi:10.1371/journal.pone.0241190

Dec 2020

Stentz R,Wegmann U,Guirro M,Bryant W,Ranjit A,Goldson A,Brion A,Gotts K,Booth K,Miquel Clopes A,Jones E,Gunning P,Sudhakar P,Modos D,Brown I,Korcsmaros T,Carding SR

Extracellular vesicles released by the human gut symbiont Bacteroides thetaiotaomicron in the mouse intestine are enriched in a selected range of proteins that influence host cell physiology and metabolism

Research Square

Publishers version: doi:10.21203/rs.3.rs-124947/v1

Dec 2020

Walkowiak S,Gao L,Monat C,Haberer G,Kassa MT,Brinton J,Ramirez-Gonzalez RH,Kolodziej MC,Delorean E,Thambugala D,Klymiuk V,Byrns B,Gundlach H,Bandi V,Siri JN,Nilsen K,Aquino C,Himmelbach A,Copetti D,Ban T,Venturini L,Bevan M,Clavijo B,Koo DH,Ens J,Wiebe K,N'Diaye A,Fritz AK,Gutwin C,Fiebig A,Fosker C,Fu BX,Accinelli GG,Gardner KA,Fradgley N,Gutierrez-Gonzalez J,Halstead-Nussloch G,Hatakeyama M,Koh CS,Deek J,Costamagna AC,Fobert P,Heavens D,Kanamori H,Kawaura K,Kobayashi F,Krasileva K,Kuo T,McKenzie N,Murata K,Nabeka Y,Paape T,Padmarasu S,Percival-Alwyn L,Kagale S,Scholz U,Sese J,Juliana P,Singh R,Shimizu-Inatsugi R,Swarbreck D,Cockram J,Budak H,Tameshige T,Tanaka T,Tsuji H,Wright J,Wu J,Steuernagel B,Small I,Cloutier S,Keeble-Gagnère G,Muehlbauer G,Tibbets J,Nasuda S,Melonek J,Hucl PJ,Sharpe AG,Clark M,Legg E,Bharti A,Langridge P,Hall A,Uauy C,Mascher M,Krattinger SG,Handa H,Shimizu KK,Distelfeld A,Chalmers K,Keller B,Mayer KFX,Poland J,Stein N,McCartney CA,Spannagl M,Wicker T,Pozniak CJ

Multiple wheat genomes reveal global variation in modern breeding.

Nature

Publishers version: doi:10.1038/s41586-020-2961-x

Dec 2020

Pulford CV,Perez-Sepulveda BM,Canals R,Bevington JA,Bengtsson RJ,Wenner N,Rodwell EV,Kumwenda B,Zhu X,Bennett RJ,Stenhouse GE,Malaka De,Webster HJ,Bengoechea JA,Dumigan A,Tran-Dien A,Prakash R,Banda HC,Alufandika L,Mautanga MP,Bowers-Barnard A,Beliavskaia AY,Predeus AV,Rowe WPM,Darby AC,Hall N,Weill FX,Gordon MA,Feasey NA,Baker KS,Hinton JCD

Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa.

Nature microbiology

Publishers version: doi:10.1038/s41564-020-00836-1

Dec 2020

Zhang H,Ehrenkaufer GM,Hall N,Singh U

Identification of oligo-adenylated small RNAs in the parasite Entamoeba and a potential role for small RNA control.

BMC genomics

Publishers version: doi:10.1186/s12864-020-07275-6

Dec 2020

Osborne P,Hall LJ,Kronfeld-Schor N,Thybert D,Haerty W

A rather dry subject; investigating the study of arid-associated microbial communities

Environmental Microbiome

Publishers version: doi:10.1186/s40793-020-00367-6

Nov 2020

Woodhouse S,He Z,Woolfenden H,Steuernagel B,Haerty W,Bancroft I,Irwin J,Morris R,Wells R

Validation of a novel associative transcriptomics pipeline in Brassica oleracea: Identifying candidates for vernalisation response

biorXiv

Publishers version: doi:10.1101/2020.11.27.400986

Nov 2020

Kingsley R,Tassinari E,Bawn M,Thilliez G,Charity O,Acton L,Kirkwood M,Petrovska L,Dallman T,Burgess C,Hall N,Duffy G

Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella Typhimurium clone

Microbial Genomics

Publishers version: doi:https://doi.org/10.1099/mgen.0.000456

Nov 2020

Genereux DP,Serres A,Armstrong J,Johnson J,Marinescu VD,Murén E,Juan D,Bejerano G,Casewell NR,Chemnick LG,Damas J,Di Palma,Diekhans M,Fiddes IT,Garber M,Gladyshev VN,Goodman L,Haerty W,Houck ML,Hubley R,Kivioja T,Koepfli KP,Kuderna LFK,Lander ES,Meadows JRS,Murphy WJ,Nash W,Noh HJ,Nweeia M,Pfenning AR,Pollard KS,Ray DA,Shapiro B,Smit AFA,Springer MS,Steiner CC,Swofford R,Taipale J,Teeling EC,Turner-Maier J,Alfoldi J,Birren B,Ryder OA,Lewin HA,Paten B,Marques-Bonet T,Lindblad-Toh K,Karlsson EK

A comparative genomics multitool for scientific discovery and conservation.

Nature

Publishers version: doi:10.1038/s41586-020-2876-6

Nov 2020

Wilson CN,Pulford CV,Akoko J,Perez Sepulveda,Predeus AV,Bevington J,Duncan P,Hall N,Wigley P,Feasey N,Pinchbeck G,Hinton JCD,Gordon MA,Fèvre EM

Salmonella identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets.

PLoS neglected tropical diseases

Publishers version: doi:10.1371/journal.pntd.0008796

Oct 2020

Blackwell T,Ford AGP,Ciezarek A,Bradbeer SJ,Gracida Juarez,Ngatunga BP,Schechonge A,Tamatamah R,Etherington G,Haerty W,Di Palma,Turner GF,Genner MJ

Newly discovered cichlid fish biodiversity threatened by hybridization with non-native species

Molecular Ecology

Publishers version: doi:https://doi.org/10.1111/mec.15638

Oct 2020

VijayKrishna N,Joshi J,Coraor N,Hillman-Jackson J,Bouvier D,Van den Beek M,Eguinoa I,Coppens F,Golitsynskiy S,Stolarczyk M,Sheffield NC,Gladman S,Cuccuru G,Grüning B,Soranzo N,Rasche H,Langhorst B,Bernt M,Fornika D,De Lima Morais DA,Barrette M,Van Heusden P,Petrillo M,Puertas-Gallardo A,Patak A,Hotz HR,Blankenberg D

Expanding the Galaxys reference data

bioRxiv

Publishers version: doi:10.1101/2020.10.09.327114

Oct 2020

Miller CN,Dumenil J,Lu FH,Smith C,McKenzie N,Chapman V,Ball J,Box M,Bevan M

Variation in the expression of a transmembrane protein influences cell growth in Arabidopsis thaliana petals by altering auxin responses.

BMC plant biology

Publishers version: doi:10.1186/s12870-020-02698-5

Oct 2020

Tekman M,Batut B,Ostrovsky A,Antoniewski C,Clements D,Ramirez F,Etherington GJ,Hotz HR,Scholtalbers J,Manning JR,Bellenger L,Doyle MA,Heydarian M,Huang N,Soranzo N,Moreno P,Mautner S,Papatheodorou I,Nekrutenko A,Taylor J,Blankenberg D,Backofen R,Grüning B

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.

GigaScience

Publishers version: doi:10.1093/gigascience/giaa102

Sep 2020

Kingsley R,Kirkwood M,Thilliez G,Pye H,Tanner J,Branchu P,Vorha P,Chintoan-Uta C,Petrovska L,Dallman T,Hall N,Stevens M

Ecological niche adaptation of a bacterial pathogen associated with reduced zoonotic potential

bioRxiv

Publishers version: doi:10.1101/2020.09.09.288845