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Dec 2019

Leggett R. M., Alcon-Giner C., Heavens D., Caim S., Brook T. C., Kujawska M., Martin S., Peel N., Acford-Palmer H., Hoyles L., Clarke P., Hall L. J., Clark M. D.

Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens.

Nature microbiology

Publishers version: doi:10.1038/s41564-019-0626-z

Dec 2019

Mehta T. K., Koch C., Nash W., Knaack S. A., Sudhakar P., Olbei M., Bastkowski S., Penso Dolfin L., Korcsmaros T., Haerty W., Roy S., Di Palma F.

Evolution of regulatory networks controlling adaptive traits in cichlids

biorxiv

Publishers version: doi:10.1101/496034

Dec 2019

Treveil A., Sudhakar P., Matthews Z., Wrzesinski T., Jones E., Brooks J., Olbei M., Hautefort I., Hall L., Carding S., Mayer U., Powell P., Wileman T., Di Palma F., Haerty W., Korcsmaros T.

Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches.

Molecular omics

Publishers version: doi:10.1039/c9mo00130a

Nov 2019

Clark M. B., Wrzesinski T., Garcia A. B., Hall N. A. L., Kleinman J. E., Hyde T., Weinberger D. R., Harrison P. J., Haerty W., Tunbridge E. M.

Long-read sequencing reveals the complex splicing profile of the psychiatric risk gene CACNA1C in human brain.

Molecular psychiatry

Publishers version: doi:10.1038/s41380-019-0583-1

Nov 2019

Edelman N. B., Frandsen P. B., Miyagi M., Clavijo B., Davey J., Dikow R. B., García-Accinelli G., Van Belleghem S. M., Patterson N., Neafsey D. E., Challis R., Kumar S., Moreira G. R. P., Salazar C., Chouteau M., Counterman B. A., Papa R., Blaxter M., Reed R. D., Dasmahapatra K. K., Kronforst M., Joron M., Jiggins C. D., McMillan W. O., Di Palma F., Blumberg A. J., Wakeley J., Jaffe D., Mallet J.

Genomic architecture and introgression shape a butterfly radiation.

Science

Publishers version: doi:10.1126/science.aaw2090

Nov 2019

Hall N.

Molecular evolution of cytochrome C oxidase-I protein of insects living in Saudi Arabia

PLoS ONE

Publishers version: doi:10.1371/journal.pone.0224336

Nov 2019

Hall N.

Single cell ecology

Philos Trans R Soc Lond B Biol Sci

Publishers version: doi:10.1098/rstb.2019.0076

Nov 2019

Zhang Y., Yang M., Duncan S., Yang X., Abdelhamid M. A. S., Huang L., Zhang H., Benfey P. N., Waller Z. A. E., Ding Y.

G-quadruplex structures trigger RNA phase separation.

Nucleic acids research

Publishers version: doi:10.1093/nar/gkz978

Oct 2019

Moschen S., Marino J., Nicosia S., Higgins J., Alseekh S., Astigueta F., Bengoa Luoni S., Rivarola M., Fernie A. R., Blanchet N., Langlade N. B., Paniego N., Fernández P., Heinz R. A.

Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach.

BMC Plant Biology

Publishers version: doi:10.1186/s12870-019-2021-6

Oct 2019

Giolai M., Verweij W., Lister A., Heavens D., Macaulay I., Clark M. D.

Spatially resolved transcriptomics reveals plant host responses to pathogens.

Plant Methods

Publishers version: doi:10.1186/s13007-019-0498-5

Oct 2019

Gihawi A., Rallapalli G., Hurst R., Cooper C. S., Leggett R. M., Brewer D. S.

SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines.

Genome biology

Publishers version: doi:10.1186/s13059-019-1819-8

Sep 2019

Shaw F., Etuk A., Davey R., Gonzalez-Beltran A., Johnson D., Laporte M. A., Rocca-Serra P., Arnaud E., Devare M., Kersey P., Sansone S. A.

COPO: a metadata platform for brokering FAIR data in the life sciences

https://www.biorxiv.org

Publishers version: doi:10.1101/782771

Sep 2019

Karlinsey J. E., Stepien T. A., Mayho M., Singletary L. A., Bingham-Ramos L. K., Brehm M. A., Greiner D. L., Shultz L. D., Gallagher L. A., Bawn M., Kingsley R. A., Libby S. J., Fang F. C.

Genome-wide Analysis of Salmonella enterica serovar Typhi in Humanized Mice Reveals Key Virulence Features.

Cell host & microbe

Publishers version: doi:10.1016/j.chom.2019.08.001

Sep 2019

Rowan B. A., Heavens D., Feuerborn T. R., Tock A. J., Henderson I. R., Weigel D.

An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features.

Genetics

Publishers version: doi:10.1534/genetics.119.302406

Aug 2019

Yanes L., Garcia Accinelli G., Wright J., Ward B. J., Clavijo B. J.

A Sequence Distance Graph framework for genome assembly and analysis

F1000 Research

Publishers version: doi:10.12688/f1000research.20233.1