Publications.

Apr 2020

Thanki A., Davey R., Haerty W.

Development of computational techniques for genomic data analysis and visualisation in model and non-model organisms

Publishers version: doi:

Mar 2020

Sauret-Gueto S., Frangedakis E., Silvestri, L., Rebmann M., Tomaselli M., Markel K., Delmans M., West A., Patron N. J., Haseloff J.

Systematic tools for reprogramming plant gene expression in a simple model, Marchantia polymorpha

BioRxiv

Publishers version: doi:10.1101/2020.02.29.971002

Feb 2020

Jones E. J., Booth C., Fonseca S., Parker A., Cross K., Clopes A., Hautefort I., Mayer U., Wileman T., Stentz R., Carding S.

The uptake, trafficking and biodistribution of Bacteroides thetaiotaomicron generated outer membrane vesicles

Frontiers in Microbiology, Microbial Physiology and Metabolism

Publishers version: doi:10.3389/fmicb.2020.00057

Jan 2020

Haldenby S,Bronowski C,Nelson C,Kenny J,Martinez-Rodriguez C,Chaudhuri R,Williams NJ,Forbes K,Strachan NJ,Pulman J,Winstanley IN,Corless CE,Humphrey TJ,Bolton FJ,O'Brien SJ,Hall N,Hertz-Fowler C,Winstanley C

Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom.

Publishers version: doi:10.1371/journal.pone.0227535

Dec 2019

De Vega J., Davey R. P., Duitama J., Escobar D., Cristancho‐Ardila M. A., Etherington G. J., Minotto A., Arenas‐Suarez N. E., Pineda‐Cardenas J. D., Correa‐Alvarez J., Camargo Rodriguez A. V., Haerty W., Mallarino-Robayo J. P., Barreto-Hernandez E., Muñoz-Torres M., Fernandez-Fuentes N., Di Palma F.

Colombia's cyberinfrastructure for biodiversity: Building data infrastructure in emerging countries to foster socioeconomic growth

Plant People Planet

Publishers version: doi:10.1002/ppp3.10086

Dec 2019

Leggett R. M., Alcon-Giner C., Heavens D., Caim S., Brook T. C., Kujawska M., Martin S., Peel N., Acford-Palmer H., Hoyles L., Clarke P., Hall L. J., Clark M. D.

Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens.

Nature microbiology

Publishers version: doi:10.1038/s41564-019-0626-z

Dec 2019

Etherington G., Soranzo N., Mohammed S., Haerty W., Davey R. P., Palma F. D.

A Galaxy-based training resource for single-cell RNA-sequencing quality control and analyses.

GigaScience

Publishers version: doi:10.1093/gigascience/giz144

Dec 2019

Bawn M., Thilliez G., Kirkwood M., Wheeler N., Petrovska L., Dallman T., Adriaenssens E., Hall N., Kingsley R.

Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

Biorxiv

Publishers version: doi:10.1101/804674

Dec 2019

Treveil A., Sudhakar P., Matthews Z., Wrzesinski T., Jones E., Brooks J., Olbei M., Hautefort I., Hall L., Carding S., Mayer U., Powell P., Wileman T., Di Palma F., Haerty W., Korcsmaros T.

Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches.

Molecular omics

Publishers version: doi:10.1039/c9mo00130a

Dec 2019

Chalmers N., Stetkiewicz S., Sudhakar P., Osei-Kwasi H., Reynolds C.

Impacts of Reducing UK Beef Consumption Using a Revised Sustainable Diets Framework

Sustainability

Publishers version: doi:10.3390/su11236863

Nov 2019

Baggs E. L., Thanki A. S., O'Grady R., Schudoma C., Haerty W., Krasileva K. V.

Convergent loss of an EDS1/PAD4 signalling pathway in several plant lineages predicts new components of plant immunity and drought response

biorXiv

Publishers version: doi:10.1101/572560

Nov 2019

Penso Dolfin L., Haerty W., Hindle A., Di Palma F.

microRNA profiling in the Weddell Seal suggests novel regulatory mechanisms contributing to diving adaptation

biorXiv

Publishers version: doi:10.1101/851394

Nov 2019

McMullan M.

Distinct life histories impact dikaryotic genome evolution in the rust fungus Puccinia striiformis causing stripe rust in wheat

Biorxiv

Publishers version: doi:10.1101/859728

Nov 2019

Clark M. B., Wrzesinski T., Garcia A. B., Hall N. A. L., Kleinman J. E., Hyde T., Weinberger D. R., Harrison P. J., Haerty W., Tunbridge E. M.

Long-read sequencing reveals the complex splicing profile of the psychiatric risk gene CACNA1C in human brain.

Molecular psychiatry

Publishers version: doi:10.1038/s41380-019-0583-1