We develop a variety of tools to support the life sciences across data management and analysis.
AEQUATUS
Aequatus is an open-source web-based tool developed at EI to visualise homologous gene structures among differing species or subtypes of a common species.
AirSurf-Lettuce
AirSurf-Lettuce is a machine-learning platform developed at EI which works with computer vision and ultra-scale images taken from the air to help categorise lettuce crops in fields.
ALVIS
Alvis is a tool that can generate visualisations for a number of common long read/contig alignment analysis tasks.
Autophagy Regulatory Network (ARN)
Autophagy is a complex cellular process having multiple roles, depending on tissue, physiological, or pathological conditions.
Bubbleparse
BubbleParse is a tool for locating SNPs in non-reference organisms from sequence reads alone.
COPO
COPO is a portal for plant scientists to describe, store and retrieve data more easily.
expVIP
RNA-Seq is a tool that enables the analysis of which genes are expressed under certain conditions in an organism.
Galaxy
Galaxy is an open, web-based platform for accessible, reproducible, and transparent data-intensive biomedical research.
KAT
KAT is a suite of tools that generate, analyse and compare k-mer spectra produced from sequence files.
Kontaminant
Kontaminant is a kmer-based screening and filtering tool for next-gen sequencing reads.
MARTi
MARTi is a software package designed for performing real-time analysis of metagenomic samples using nanopore sequencing.
MISO
MISO is an open-source Lab Information Management System (LIMS) for tracking next-generation sequencing experiments.
NanoOK
NanoOK is a tool for comprehensive analysis of Oxford Nanopore MinION sequence data.
NanoOK RT
NanoOK RT is a tool for real-time species classification and antimicrobial resistance identification from nanopore sequencing data.
NextClip
NextClip is a tool for comprehensive quality analysis and read preparation for Nextera long mate pair (LMP) libraries.
NRF2ome
NRF2-ome provides an integrated and systems-level database for NRF2.
Polymarker
PolyMarker is a tool that simplifies the design of genetic markers, a laboratory test to know if certain variant of the genome is present or not in a plant.
RADPlex
RADplex is a RADSeq demultiplexing tool.
RAMPART
RAMPART is a configurable pipeline for de novo assembly of DNA sequence data.
SalmoNET
SalmoNet combines manual curation, high-throughput data and computational predictions to provide an integrated network for Salmonella at the transcriptional regulatory, metabolic and protein-protein interaction levels.
SignaLink
Effectively analyse signalling pathways, scaffold proteins, modifier enzymes, transcription factors and miRNAs that are important in the regulation of signalling processes.
StatsDB
StatsDB is an open-source software package for storage and analysis of next generation sequencing run metrics.
Portcullis
Efficient and accurate splice junction prediction from pre-mapped RNAseq reads.
TGAC Browser
A web-based genomics browser with novel rendering and annotation capabilities.
SPECTRE
A suite of phylogenetic tools for reticulate evolution.
MIKADO
Mikado is a tool to combine and filter multiple transcript annotations, providing a tailored and coherent gene annotation.