Publications.

Mar 2012

Applegate C. S., Laycock S. D., Day A. M.

A sketch-based system for highway design with user-specified regions of influence

Computers & Graphics

Publishers version: doi:10.1016/j.cag.2012.03.033

Mar 2012

Cheynier V., Sarni-Manchado P., Quideau S., Martin C., Zhang Y., Tomlinson L., Kallam K., Luo J., Jones J. D. G., Granell A., Orzaez D., Butelli E.

Colouring up Plant Biotechnology

Publishers version: doi:10.1002/9781118299753.ch5

Mar 2012

Verbrugghe E., Vandenbroucke V., Dhaenens M., Shearer N., Goossens J., De Saeger S., Eeckhout M., DHerde K., Thompson A., Deforce D., Boyen F., Leyman B., Van Parys A., De Backer P., Haesebrouck F., Croubels S., Pasmans F.

T-2 toxin induced Salmonella Typhimurium intoxication results in decreased Salmonella numbers in the cecum contents of pigs, despite marked effects on Salmonella-host cell interactions

Veterinary Research

Publishers version: doi:

Mar 2012

Butelli E., Licciardello C., Zhang Y., Liu J., Mackay S., Bailey P., Reforgiato-Recupero G., Martin C.

Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges.

Plant Cell

Publishers version: doi:10.1105/tpc.111.095232

Mar 2012

Rogers J.

Insights into hominid evolution from the gorilla genome sequence.

Nature

Publishers version: doi:10.1038/nature10842

Feb 2012

Brown A. P., Kroon J. T., Swarbreck D., Febrer M., Larson T. R., Graham I. A., Caccamo M., Slabas A. R.

Tissue-specific whole transcriptome sequencing in castor, directed at understanding triacylglycerol lipid biosynthetic pathways.

PLoS One

Publishers version: doi:10.1371/journal.pone.0030100

Feb 2012

Rolfe M. D., Rice C. J., Lucchini S., Pin C., Thompson A., Cameron A. D., Alston M., Stringer M. F., Betts R. P., Baranyi J., Peck M. W., Hinton J. C.

Lag phase is a distinct growth phase that prepares bacteria for exponential growth and involves transient metal accumulation.

Journal of Bacteriology

Publishers version: doi:10.1128/JB.06112-11

Jan 2012

Ramachandran V. K., Shearer N., Jacob J., Sharma C. M., Thompson A.

The architecture and ppGpp dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression

BMC Genomics

Publishers version: doi:

Jan 2012

Iqbal Z., Caccamo M., Turner I., Flicek P., McVean G.

De novo assembly and genotyping of variants using colored de Bruijn graphs.

Nature Genetics

Publishers version: doi:10.1038/ng.1028

Jan 2012

O'Neill C. M., Morgan C., Hattori C., Brennan M., Rosas U., Tschoep H., Deng P. X., Baker D., Wells R., Bancroft I.

Towards the genetic architecture of seed lipid biosynthesis and accumulation in Arabidopsis thaliana

Heredity

Publishers version: doi:10.1038/hdy.2011.54

Jan 2012

Trick M., Adamski N. M., Mugford S. G., Jiang C. C., Febrer M., Uauy C.

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat.

BMC Plant Biology

Publishers version: doi:10.1186/1471-2229-12-14

Jan 2012

Lamesch P., Berardini T. Z., Li D., Swarbreck D., Wilks C., Sasidharan R., Muller R., Dreher K., Alexander D. L., Garcia-Hernandez M., Karthikeyan A. S., Lee C. H., Nelson W. D., Ploetz L., Singh S., Wensel A., Huala E.

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools.

Nucleic Acids Research

Publishers version: doi:10.1093/nar/gkr1090

Jan 2012

Nasiadka A., Clark M. D.

Zebrafish breeding in the laboratory environment.

Institute for Laboratory Animal Research Journal

Publishers version: doi:10.1093/ilar.53.2.161

Jan 2012

Terpolilli J. J., Hood G. A., Poole P. S.

What determines the efficiency of N(2)-fixing Rhizobium-legume symbioses?

Advanced Microbial Physiology

Publishers version: doi:10.1016/B978-0-12-398264-3.00005-X

Dec 2011

Earl D., Bradnam K., St John J., Darling A., Lin D., Fass J., Yu H. O., Buffalo V., Zerbino D. R., Diekhans M., Nguyen N., Ariyaratne P. N., Sung W. K., Ning Z., Haimel M., Simpson J. T., Fonseca N. A., Birol I., Docking T. R., Ho I. Y., Rokhsar D. S., Chikhi R., Lavenier D., Chapuis G., Naquin D., Maillet N., Schatz M. C., Kelley D. R., Phillippy A. M., Koren S., Yang S. P., Wu W., Chou W. C., Srivastava A., Shaw T. I., Ruby J. G., Skewes-Cox P., Betegon M., Dimon M. T., Solovyev V., Seledtsov I., Kosarev P., Vorobyev D., Ramirez-Gonzalez R., Leggett R., MacLean D., Xia F., Luo R., Li Z., Xie Y.

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Genome Research

Publishers version: doi:10.1101/gr.126599.111