Publications.

Sep 2011

Clark M. D., Guryev V., Bruijn E., Nijman I. J., Tada M., Wilson C., Deloukas P., Postlethwait J. H., Cuppen E., Stemple D. L.

Single nucleotide polymorphism (SNP) panels for rapid positional cloning in zebrafish.

Publishers version: doi:10.1016/B978-0-12-374814-0.00013-6

Sep 2011

Hall N.

Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes

Proceedings of the National Academy of Sciences of the United States of America

Publishers version: doi:10.1073/pnas.1105100108

Aug 2011

Vandenbroucke V., Croubels S., Martel A., Verbrugghe E., Goossens J., Van Deun K., Boyen F., Thompson A., Shearer N., De Backer P., Haesebrouck F., Pasmans F.

The mycotoxin deoxynivalenol potentiates intestinal inflammation by Salmonella Typhimurium associated with enhanced invasion and translocation but without affecting bacterial gene expression.

PloS ONE

Publishers version: doi:

Aug 2011

Appia-Ayme C., Patrick E., J Sullivan M., Alston M. J., Field S. J., Abuoun M., Anjum M. F., Rowley G.

Novel inducers of the envelope stress response BaeSR in Salmonella Typhimurium: BaeR is critically required for tungstate waste disposal

PLoS One

Publishers version: doi:10.1371/journal.pone.0023713

Aug 2011

Bancroft I., Morgan C., Fraser F., Higgins J., Wells R., Clissold L., Baker D., Long Y., Meng J., Wang X., Liu S., Trick M.

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing.

Nature Biotechnology

Publishers version: doi:10.1038/nbt.1926

Aug 2011

Heavens D., Tailford L. E., Crossman L., Jeffers F., Mackenzie D. A., Caccamo M., Juge N.

Genome sequence of the vertebrate gut symbiont Lactobacillus reuteri ATCC 53608.

Journal of Bacteriology

Publishers version: doi:10.1128/JB.05282-11

Aug 2011

Seipke R. F., Crossman L., Drou N., Heavens D., Bibb M. J., Caccamo M., Hutchings M. I.

Draft genome sequence of Streptomyces strain S4, a symbiont of the leaf-cutting ant Acromyrmex octospinosus

Journal of Bacteriology

Publishers version: doi:10.1128/JB.05275-11

Aug 2011

O'Neill C. M., Baker D., Bennett G., Clarke J., Bancroft I.

Two high linolenic mutants of Arabidopsis thaliana contain megabase-scale genome duplications encompassing the FAD3 locus

Plant Journal

Publishers version: doi:10.1111/j.1365-313X.2011.04742.x

Aug 2011

Danecek P., Auton A., Abecasis G., Albers C. A., Banks E., DePristo M. A., Handsaker R. E., Lunter G., Marth G. T., Sherry S. T., McVean G., Durbin R., 1000 Genomes Project Analysis Group M., Caccamo M.

The variant call format and VCFtools.

Bioinformatics

Publishers version: doi:10.1093/bioinformatics/btr330

Jul 2011

Febrer M., McLay K., Caccamo M., Twomey K. B., Ryan R. P.

Advances in bacterial transcriptome and transposon insertion-site profiling using second-generation sequencing.

Trends in Biotechnology

Publishers version: doi:10.1016/j.tibtech.2011.06.004

Jul 2011

Hu Z. L., Ramos A. M., Humphray S. J., Rogers J., Reecy J. M., Rothschild M. F.

Use of genome sequence information for meat quality trait QTL mining for causal genes and mutations on pig chromosome 17

Frontiers in Genetics

Publishers version: doi:10.3389/fgene.2011.00043

Jul 2011

Hall N.

Evolutionary genomics of Entamoeba

Res Microbiol

Publishers version: doi:10.1016/j.resmic.2011.01.007

Jul 2011

Hall N.

Identification of a mutation associated with fatal Foal Immunodeficiency Syndrome in the Fell and Dales pony

PLoS Genetics

Publishers version: doi:10.1371/journal.pgen.1002133

Jun 2011

Hall N.

Evidence of gene conversion in genes encoding the Gal/GalNac lectin complex of Entamoeba

PLoS Negl Trop Dis

Publishers version: doi:10.1371/journal.pntd.0001209

Jun 2011

Hall N.

Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes

Environmental Microbiology

Publishers version: doi:10.1111/j.1462-2920.2011.02461.x