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Jun 2020

Reddington K,Eccles D,O J,Drown DM,Hansen LH,Nielsen TK,Ducluzeau A,Leggett R,Heavens D,Peel N,Snutch TP,Bayega A,Oikonomopoulos S,Ragoussis I,Barry T,van der Helm E,Jolic D,Richardson H,Jansen H,Tyson JR,Jain M,Brown BL

Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function

GigaScience

Publishers version: doi:10.1093/gigascience/giaa053

Jun 2020

Bovo Samuele,Ribani Anisa,Munoz Maria,Alves Estefania,Araujo Jose,Bozzi Riccardo,Charneca Rui,Di Palma F,Etherington G,Fernandez Ana,Garcia Fabian,García-Casco Juan,Karolyi Danijel,Gallo Maurizio,Gvozdanovic Katarina,Martins Jose,Mercat Marie,Nunez Yolanda,Quintanilla Raquel,Radovic Cedomir,Razmaite Violeta,Riquet Juliette,Savic Radomir,Schiavo Giuseppina,krlep Martin,Usai Graziano,Utzeri Valerio,Zimmer Christoph,Ovilo Cristina,Fontanesi Luca

Genome-wide detection of copy number variants in European autochthonous and commercial pig breeds by whole-genome sequencing of DNA pools identified breed-characterising copy number states

Animal Genetics

Publishers version: doi:10.1111/age.12954

Jun 2020

Shaw F,Etuk E,Minotto A,Gonzalez-Beltran A,Johnson D,Rocca-Serra P,Laporte M,Arnaud E,Devare M,Kersey P,Sansone S,Davey R

COPO: a metadata platform for brokering FAIR data in the life sciences

f1000Research

Publishers version: doi:10.12688/f1000research.23889.1

Jun 2020

Hildebrand FH,Pallen MP,Bork PB

Towards standardisation of naming novel prokaryotic taxa in the age of high-throughput microbiology

Gut

Publishers version: doi:10.1136/gutjnl-2019-319045

Jun 2020

Penso-Dolfin L,Man A,Mehta T,Haerty W,Di Palma

Analysis of structural variants in four African cichlids highlights an association with developmental and immune related genes.

BMC evolutionary biology

Publishers version: doi:10.1186/s12862-020-01629-0

Jun 2020

Lu FH,McKenzie N,Gardiner LJ,Luo MC,Hall A,Bevan MW

Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of diploid Aegilops tauschii and hexaploid wheat.

GigaScience

Publishers version: doi:https://doi.org/10.1093/gigascience/giaa070

May 2020

Kemp L., Adam L., Boehm C. R., Breitling R., Casagrande R., Dando M., Djikeng A., Evans N. G., Hammond R., Hills K., Holt L. A., Kuiken T., Markotić A., Millett P., Napier J. A., Nelson C., ÓHÉIgeartaigh S., Osbourn A., Palmer M. J., Patron N. J., Perello E., Piyawattanametha W., Restrepo-Schild V., Rios-Rojas C., Rhodes C., Roessing A., Scott D., Shapira P., Simuntala C., Smith R. D. J., Sundaram L. S., Takano E., Uttmark G., Wintle B. C., Zahra N. B., Sutherland W. J.

­Bioengineering Horizon Scan 2020

eLife

Publishers version: doi:10.7554/eLife.54489

May 2020

Andrighetti T., Bohar B., Lemke N., Sudhakar P., Korcsmaros T.

MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome-Host Interactions.

Cells

Publishers version: doi:10.3390/cells9051278

May 2020

Cai Y., Kallam K., Tidd H., Gendarini G., Salzman A., Patron N. J.

Rational Design of Minimal Synthetic Promoters for Plants

biorxiv.org

Publishers version: doi:10.1101/2020.05.14.095406

May 2020

McMullan M

Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust FungusPuccinia striiformisCausing Stripe Rust in Wheat

Genome Biology and Evolution

Publishers version: doi:10.1093/gbe/evaa071

May 2020

Jones C., De Vega J., Lloyd D., Hegarty M., Ayling S., Powell W., Skøt L.

Population structure and genetic diversity in red clover (Trifolium pratense L.) germplasm.

Scientific reports

Publishers version: doi:10.1038/s41598-020-64989-z

May 2020

Etherington GJ,Heavens D,Baker D,Lister A,McNelly R,Garcia G,Clavijo B,Macaulay I,Haerty W,Di Palma F

Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal.

GigaScience

Publishers version: doi:10.1093/gigascience/giaa045

Apr 2020

Emmrich P. M. F., Sarkar A., Njaci I., Kaithakottil G. G., Ellis T. H. N., Moore C., Edwards A., Heavens D., Waite D., Cheema J., Trick M., Moore J., Webb A., Calazzo R., Thomas J., Higgins J., Swarbreck D., Kumar S., Mundree S., Loose M., Yant L., Martin C., Wang T. L.

A draft genome sequence of grass pea (Lathyrus sativus), a resilient diploid legume

https://biorxiv.org/cgi/content/short/2020.04.24.058164v1

Publishers version: doi:10.1101/2020.04.24.0581

Apr 2020

Patron N. J.

Beyond natural: synthetic expansions of botanical form and function.

New Phytologist

Publishers version: doi:10.1111/nph.16562

Apr 2020

Schreiber M., Mascher M., Wright J., Padmarasu S., Himmelbach A., Heavens D., Milne L., Clavijo B. J., Stein N., Waugh R.

A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise.

G3 (Bethesda, Md.)

Publishers version: doi:10.1534/g3.119.401010