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Apr 2018

Hall N.

Genomics of habitat choice and adaptive evolution in a deep-sea fish

Nature Ecology and Evolution

Publishers version: doi:10.1038/s41559-018-0482-x

Apr 2018

McMullan M., Rafiqi M., Kaithakottil G., Clavijo B. J., Bilham L., Orton E., Percival-Alwyn L., Ward B. J., Edwards A., Saunders D. G. O., Garcia Accinelli G., Wright J., Verweij W., Koutsovoulos G., Yoshida K., Hosoya T., Williamson L., Jennings P., Ioos R., Husson C., Hietala A. M., Vivian-Smith A., Solheim H., MaClean D., Fosker C., Hall N., Brown J. K. M., Swarbreck D., Blaxter M., Downie J. A., Clark M. D.

The ash dieback invasion of Europe was founded by two genetically divergent individuals.

Nature ecology & evolution

Publishers version: doi:10.1038/s41559-018-0548-9

Apr 2018

Mincarelli L., Lister A., Lipscombe J., Macaulay I. C.

Defining Cell Identity with Single Cell Omics.

Proteomics

Publishers version: doi:10.1002/pmic.201700312

Apr 2018

Thybert D., Roller M., Navarro F. C. P., Fiddes I., Streeter I., Feig C., Martin-Galvez D., Kolmogorov M., Janouek V., Akanni W., Aken B., Aldridge S., Chakrapani V., Chow W., Clarke L., Cummins C., Doran A., Dunn M., Goodstadt L., Howe K., Howell M., Josselin A. A., Karn R. C., Laukaitis C. M., Jingtao L., Martin F., Muffato M., Nachtweide S., Quail M. A., Sisu C., Stanke M., Stefflova K., Van Oosterhout C., Veyrunes F., Ward B., Yang F., Yazdanifar G., Zadissa A., Adams D. J., Brazma A., Gerstein M., Paten B., Pham S., Keane T. M., Odom D. T., Flicek P.

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes.

Genome Research

Publishers version: doi:10.1101/gr.234096.117

Apr 2018

Hall A.

Coordination of robust single cell rhythms in the Arabidopsis circadian clock via spatial waves of gene expression.

eLife

Publishers version: doi:10.7554/eLife.31700

Apr 2018

Hall A.

A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample.

BMC Genomics

Publishers version: doi:10.1186/s12864-018-4640-y

Apr 2018

Hall N.

A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample

BMC Genomics

Publishers version: doi:10.1186/s12864-018-4640-y

Mar 2018

Palkopoulou E., Lipson M., Mallick S., Nielsen S., Rohland N., Baleka S., Karpinski E., Ivancevic A. M., To T. H., Kortschak R. D., Raison J. M., Qu Z., Chin T. J., Alt K. W., Claesson S., Dalen L., MacPhee R. D. E., Meller H., Roca A. L., Ryder O. A., Heiman D., Young S., Breen M., Williams C., Aken B. L., Ruffier M., Karlsson E., Johnson J., Di Palma F., Alfoldi J., Adelson D. L., Mailund T., Munch K., Lindblad-Toh K., Hofreiter M., Poinar H., Reich D.

A comprehensive genomic history of extinct and living elephants.

Proceedings of the National Academy of Sciences of the United States of America

Publishers version: doi:10.1073/pnas.1720554115

Mar 2018

Vazquez-Vilar M., Orzaez D., Patron N. J.

DNA assembly standards: Setting the low-level programming code for plant biotechnology

Plant Science

Publishers version: doi:10.1016/j.plantsci.2018.02.024

Mar 2018

Kapuy O., Papp D., Vellai T., Bánhegyi G., Korcsmaros T.

Systems-Level Feedbacks of NRF2 Controlling Autophagy upon Oxidative Stress Response.

Antioxidants (Basel, Switzerland)

Publishers version: doi:10.3390/antiox7030039

Feb 2018

Modha S., Thanki A., Cotmore S. F., Davidson A., Hughes J.

ViCTree: An automated framework for taxonomic classification from protein sequences

Bioinformatics

Publishers version: doi:10.1093/bioinformatics/bty099

Feb 2018

Thanki A. S., Soranzo N., Haerty W., Davey R. P.

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees Pipeline.

GigaScience

Publishers version: doi:10.1093/gigascience/giy005

Feb 2018

Clark M. B., Wrzesinski T., Garcia-Bea A., Kleinman J. E., Hyde T., Weinberger D. R., Haerty W., Tunbridge E. M.

Long-read sequencing reveals the splicing profile of the calcium channel gene CACNA1C in human brain

bioRxiv

Publishers version: doi:10.1101/260562

Feb 2018

Kuhaudomlarp S., Patron N. J., Henrissat B., Rejzek M., Saalbach G., Field R. A.

Identification ofEuglena gracilisß-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149.

Journal of Biological Chemistry

Publishers version: doi:10.1074/jbc.RA117.000936

Feb 2018

Bailey P. C., Schudoma C., Jackson W., Baggs E., Dagdas G., Haerty W., Moscou M., Krasileva K. V.

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions.

Genome biology

Publishers version: doi:10.1186/s13059-018-1392-6