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Aug 2019

Peel N., Dicks L. V., Clark M. D., Heavens D., Percival‐Alwyn L., Cooper C., Davies R. G., Leggett R. M., Yu D.

Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet)

Methods in Ecology and Evolution

Publishers version: doi:10.1111/2041-210X.13265

Jul 2019

Alkhudaydi T., Reynolds D., Griffiths S., Zhou J., De La Iglesia B.

An Exploration of Deep-Learning Based Phenotypic Analysis to Detect Spike Regions in Field Conditions for UK Bread Wheat

Plant Phenomics

Publishers version: doi:10.34133/2019/7368761

Jul 2019

Alrefaei A. F., Low R., Hall N., Jardim R., Dávila A., Gerhold R., John S., Steinbiss S., Cunningham A. A., Lawson B., Bell D., Tyler K.

Multilocus Analysis Resolves the European Finch Epidemic Strain of Trichomonas gallinae and Suggests Introgression from Divergent Trichomonads.

Genome biology and evolution

Publishers version: doi:10.1093/gbe/evz164

Jul 2019

Charalampous T., Kay G. L., Richardson H., Aydin A., Baldan R., Jeanes C., Rae D., Grundy S., Turner D. J., Wain J., Leggett R., Livermore D. M., O'Grady J.

Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection.

Nature Biotechnology

Publishers version: doi:10.1038/s41587-019-0156-5

Jul 2019

Charalampous T., Kay G. L., Richardson H., Aydin A., Baldan R., Jeanes C., Rae D., Grundy S., Turner D. J., Wain J., Leggett R. M., Livermore D. M., O'Grady J.

Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection.

Nature Biotechnology

Publishers version: doi:10.1038/s41587-019-0156-5

Jun 2019

Thanki A., Bian X., Davey R.

TGAC Browser: an open-source genome browser for non-model organisms

bioRxiv

Publishers version: doi:10.1101/677658

Jun 2019

Martin S., Leggett R.

Alvis: a tool for contig and read ALignment VISualisation and chimera detection

bioRxiv

Publishers version: doi:10.1101/663401

Jun 2019

Bauer A., Bostrom A., Ball J., Applegate C., Cheng T., Laycock S., Moreno Rojas S., Kirwan J., Zhou J.

Combining computer vision and deep learning to enable ultra-scale aerial phenotyping and precision agriculture: A case study of lettuce production.

Horticulture research

Publishers version: doi:10.1038/s41438-019-0151-5

Jun 2019

Tassinari E., Duffy G., Bawn M., Burgess C. M., McCabe E. M., Lawlor P. G., Gardiner G., Kingsley R. A.

Microevolution of antimicrobial resistance and biofilm formation of Salmonella Typhimurium during persistence on pig farms.

Scientific reports

Publishers version: doi:10.1038/s41598-019-45216-w

Jun 2019

Hildebrand F., Pallen M. J., Bork P.

Towards standardisation of naming novel prokaryotic taxa in the age of high-throughput microbiology.

Gut

Publishers version: doi:10.1136/gutjnl-2019-319045

Jun 2019

Hall N.

DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies.

Sci Rep

Publishers version: doi:10.1038/s41598-019-44974-x

Jun 2019

Hall N.

The diversity, evolution and ecology of Salmonella in venomous snakes.

PLoS Negl Trop Dis

Publishers version: doi:10.1371/journal.pntd.0007169

May 2019

Branchu P., Charity O. J., Bawn M., Thilliez G., Dallman T. J., Petrovska L., Kingsley R.

SGI-4 in Monophasic Salmonella Typhimurium ST34 Is a Novel ICE That Enhances Resistance to Copper.

Frontiers in microbiology

Publishers version: doi:10.3389/fmicb.2019.01118

May 2019

Reynolds D., Baret F., Welcker C., Bostrom A., Ball J., Cellini F., Lorence A., Chawade A., Khafif M., Noshita K., Mueller-Linow M., Zhou J., Tardieu F.

What is cost-efficient phenotyping? Optimizing costs for different scenarios

Plant Science

Publishers version: doi:10.1016/j.plantsci.2018.06.015

May 2019

Sirey T. M., Roberts K., Haerty W., Bedoya-Reina O., Rogatti-Granados S., Tan J. Y., Li N., Heather L. C., Carter R. N., Finch A. J., Morton N. M., Marques A. C., Ponting C. P.

The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity

eLife

Publishers version: doi:10.7554/eLife.45051