Publications.

Dec 2018

Mapleson D., Venturini L., Kaithakottil G., Swarbreck D.

Efficient and accurate detection of splice junctions from RNA-seq with Portcullis.

GigaScience

Publishers version: doi:10.1093/gigascience/giy131

Dec 2018

Molero G., Joynson R., Pinera-Chavez F. J., Gardiner L. J., Rivera-Amado C., Hall A., Reynolds M. P.

Elucidating the genetic basis of biomass accumulation and radiation use efficiency in spring wheat and its role in yield potential.

Plant Biotechnology Journal

Publishers version: doi:10.1111/pbi.13052

Dec 2018

Carrasco Lopez J., Lucena-Padrós H., Brenes M., Ruiz-Barba J. L.

Expression of genes involved in metabolism of phenolic compounds by Lactobacillus pentosus and its relevance for table-olive fermentations.

Food Microbiology

Publishers version: doi:10.1016/j.fm.2018.06.020

Dec 2018

Cocker J. M., Wright J., Li J., Swarbreck D., Dyer S., Caccamo M., Gilmartin P. M.

Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative genomics on the heterostyly supergene.

Scientific reports

Publishers version: doi:10.1038/s41598-018-36304-4

Nov 2018

Antoniou-Kourounioti R. L., Hepworth J., Heckmann A., Duncan S., Qüesta J., Rosa S., Säll T., Holm S., Dean C., Howard M.

Temperature sensing is distributed throughout the regulatory network that controls FLC epigenetic silencing in vernalization

Cell Systems

Publishers version: doi:10.1016/j.cels.2018.10.011

Nov 2018

Hannah J., Roe M., Warthon Medina M., Pinchen H., Barrett M., Perry S., Finglas P. M.

Phosphorus in food: limitations of food composition data

Journal of Kidney Care

Publishers version: doi:10.12968/jokc.2018.3.6.362

Nov 2018

Sierocinski P., Bayer F., Yvon-Durocher G., Burdon M., Großkopf T., Alston M., Swarbreck D., Hobbs P. J., Soyer O. S., Buckling A.

Biodiversity-function relationships in methanogenic communities.

Molecular Ecology

Publishers version: doi:10.1111/mec.14895

Nov 2018

Ghosh S., Watson A., Gonzalez-Navarro O. E., Ramirez-Gonzalez R., Yanes L., Mendoza-Suárez M., Simmonds J., Wells R., Rayner T., Green P., Hafeez A., Hayta S., Melton R. E., Steed A., Sarkar A., Carter J., Perkins L., Lord J., Tester M., Osbourn A., Moscou M. J., Nicholson P., Harwood W., Martin C., Domoney C., Uauy C., Hazard B., Wulff B. B. H., Hickey L. T.

Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

Nature Protocols

Publishers version: doi:10.1038/s41596-018-0072-z

Nov 2018

Csabai L., Olbei M., Budd A., Korcsmaros T., Fazekas D.

SignaLink: Multilayered Regulatory Networks.

Publishers version: doi:10.1007/978-1-4939-8618-7_3

Nov 2018

Ayling M., Clark M. D., Leggett R. M.

New approaches for assembly of short-read metagenomic data

PeerJ Preprints

Publishers version: doi:10.7287/peerj.preprints.27332v1

Nov 2018

Thanki A., Soranzo N., Herrero J., Haerty W., Davey R.

Aequatus: An open-source homology browser

GigaScience

Publishers version: doi:10.1093/gigascience/giy128

Nov 2018

Lilue J., Doran A. G., Fiddes I. T., Abrudan M., Armstrong J., Bennett R., Chow W., Collins J., Collins S., Czechanski A., Danecek P., Diekhans M., Dolle D. D., Dunn M., Durbin R., Earl D., Ferguson-Smith A., Flicek P., Flint J., Frankish A., Fu B., Gerstein M., Gilbert J., Goodstadt L., Harrow J., Howe K., Ibarra-Soria X., Kolmogorov M., Lelliott C. J., Logan D. W., Loveland J., Mathews C. E., Mott R., Muir P., Nachtweide S., Navarro F. C. P., Odom D. T., Park N., Pelan S., Pham S. K., Quail M., Reinholdt L., Romoth L., Shirley L., Sisu C., Sjoberg-Herrera M., Stanke M., Steward C., Thomas M., Threadgold G., Thybert D., Torrance J., Wong K., Wood J., Yalcin B., Yang F., Adams D. J., Paten B., Keane T. M.

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.

Nature Genetics

Publishers version: doi:10.1038/s41588-018-0223-8

Nov 2018

Penso Dolfin L., Moxon S., Haerty W., Di Palma F.

The evolutionary dynamics of microRNAs in domestic mammals.

Scientific reports

Publishers version: doi:10.1038/s41598-018-34243-8