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Mar 2018

Kapuy O., Papp D., Vellai T., Bánhegyi G., Korcsmaros T.

Systems-Level Feedbacks of NRF2 Controlling Autophagy upon Oxidative Stress Response.

Antioxidants (Basel, Switzerland)

Publishers version: doi:10.3390/antiox7030039

Feb 2018

Modha S., Thanki A., Cotmore S. F., Davidson A., Hughes J.

ViCTree: An automated framework for taxonomic classification from protein sequences

Bioinformatics

Publishers version: doi:10.1093/bioinformatics/bty099

Feb 2018

Clark M. B., Wrzesinski T., Garcia-Bea A., Kleinman J. E., Hyde T., Weinberger D. R., Haerty W., Tunbridge E. M.

Long-read sequencing reveals the splicing profile of the calcium channel gene CACNA1C in human brain

bioRxiv

Publishers version: doi:10.1101/260562

Jan 2018

Halewood M., Chiurugwi T., Sackville Hamilton R., Kurtz B., Marden E., Welch E., Michiels F., Mozafari J., Sabran M., Patron N., Kersey P., Bastow R., Dorius S., Dias S., McCouch S., Powell W.

Plant genetic resources for food and agriculture: opportunities and challenges emerging from the science and information technology revolution.

New Phytologist

Publishers version: doi:10.1111/nph.14993

Jan 2018

Ward N. J., Green D., Higgins J., Dalmay T., Münsterberg A., Moxon S., Wheeler G. N.

microRNAs associated with early neural crest development in Xenopus laevis.

BMC Genomics

Publishers version: doi:10.1186/s12864-018-4436-0

Jan 2018

Watson A., Ghosh S., Williams M. J., Cuddy W. S., Simmonds J., Rey M. -. D., Hatta M. A. M., Hinchliffe A., Steed A., Reynolds D., Adamski N. M., Breakspear A., Korolev A., Rayner T., Dixon L. E., Riaz A., Martin W., Ryan M., Edwards D., Batley J., Raman H., Carter J., Rogers C., Domoney C., Moore G., Harwood W., Nicholson P., Dieters M. J., DeLacy I. H., Zhou J., Uauy C., Boden S. A., Park R. F., Wulff B. B. H., Hickey L. T.

Speed breeding is a powerful tool to accelerate crop research and breeding

Nature Plants

Publishers version: doi:10.1038/s41477-017-0083-8

Dec 2017

Zhou J., Applegate C., Alonso A., Reynolds D., Orford S., Mackiewicz M., Griffiths S., Penfield S., Pullen N.

Leaf-GP: an open and automated software application for measuring growth phenotypes for arabidopsis and wheat

Plant Methods

Publishers version: doi:10.1186/s13007-017-0266-3

Dec 2017

Kiu R., Caim S., Alexander S., Pachori P., Hall L.

Probing genomic aspects of the multi-host pathogen Clostridium perfringens reveals significant pangenome diversity, and a diverse array of virulence factors.

Frontiers in Microbiology

Publishers version: doi:10.3389/fmicb.2017.02485

Dec 2017

Gaimster H., Alston M., Richardson D., Gates A., Rowley G.

Transcriptional and Environmental Control of Bacterial Denitrification and N2O Emissions.

FEMS Microbiology Letters

Publishers version: doi:10.1093/femsle/fnx277

Nov 2017

Heman-Ackah S. M., Manzano R., Hoozemans J. J. M., Scheper W., Flynn R., Haerty W., Cowley S. A., Bassett A. R., Wood M. J. A.

Alpha-synuclein induces the unfolded protein response in Parkinson's disease SNCA triplication iPSC-derived neurons

Hum Mol Genet

Publishers version: doi:10.1093/hmg/ddx331

Nov 2017

Mapleson D., Venturini L., Kaithakottil G., Swarbreck D.

Efficient and accurate detection of splice junctions from RNA-Seq with Portcullis

bioRxiv

Publishers version: doi:10.1101/217620

Nov 2017

Sierocinski P., Milferstedt K., Bayer F., Grosskopf T., Alston M., Bastkowski S., Swarbreck D., Hobbs P., Soyer O. S., Hamelin J., Buckling A.

A Single Community Dominates Structure and Function of a Mixture of Multiple Methanogenic Communities.

Current Biology

Publishers version: doi:10.1016/j.cub.2017.09.056

Nov 2017

Zimin A. V., Puiu D., Hall R., Kingan S., Clavijo B., Salzberg S. L.

The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum.

GigaScience

Publishers version: doi:10.1093/gigascience/gix097

Oct 2017

Metris A., Sudhakar P., Fazekas D., Demeter A., Eszter A., Olbei M., Branchu P., Kingsley R., Baranyi J., Korcsmaros T.

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation

Nature Partner Journals Systems Biology and Applications

Publishers version: doi:doi:10.1038/s41540-017-0034-z

Oct 2017

Bastkowski S., Mapleson D., Spillner A., Wu T., Moulton V.

SPECTRE: a Suite of PhylogEnetiC Tools for Reticulate Evolution

BioRxiv

Publishers version: doi:10.1101/169177