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Sep 2019

Shaw F., Etuk A., Davey R., Gonzalez-Beltran A., Johnson D., Laporte M. A., Rocca-Serra P., Arnaud E., Devare M., Kersey P., Sansone S. A.

COPO: a metadata platform for brokering FAIR data in the life sciences

https://www.biorxiv.org

Publishers version: doi:10.1101/782771

Sep 2019

Karlinsey J. E., Stepien T. A., Mayho M., Singletary L. A., Bingham-Ramos L. K., Brehm M. A., Greiner D. L., Shultz L. D., Gallagher L. A., Bawn M., Kingsley R. A., Libby S. J., Fang F. C.

Genome-wide Analysis of Salmonella enterica serovar Typhi in Humanized Mice Reveals Key Virulence Features.

Cell host & microbe

Publishers version: doi:10.1016/j.chom.2019.08.001

Sep 2019

Rowan B. A., Heavens D., Feuerborn T. R., Tock A. J., Henderson I. R., Weigel D.

An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features.

Genetics

Publishers version: doi:10.1534/genetics.119.302406

Aug 2019

Yanes L., Garcia Accinelli G., Wright J., Ward B. J., Clavijo B. J.

A Sequence Distance Graph framework for genome assembly and analysis

F1000 Research

Publishers version: doi:10.12688/f1000research.20233.1

Aug 2019

Mathers T. C., Mugford S. T., Percival-Alwyn L., Chen Y., Kaithakottil G., Swarbreck D., Hogenhout S. A., van Oosterhout C.

Sex-specific changes in the aphid DNA methylation landscape.

Molecular Ecology

Publishers version: doi:10.1111/mec.15216

Aug 2019

Gaimster H., Hews C. L., Griffiths R., Soriano-Laguna M. J., Alston M., Richardson D. J., Gates A. J., Rowley G.

A Central Small RNA Regulatory Circuit Controlling Bacterial Denitrification and N2O Emissions.

mBio

Publishers version: doi:10.1128/mBio.01165-19

Aug 2019

Etherington G. J., Heavens D., Baker D., Lister A., McNelly R., Garcia G., Clavijo B., Macaulay I., Haerty W., Di Palma F.

Sequencing smart: De novo sequencing and assembly approaches for non-model mammals

biorXiv

Publishers version: doi:10.1101/723890

Aug 2019

Peel N., Dicks L. V., Clark M. D., Heavens D., Percival‐Alwyn L., Cooper C., Davies R. G., Leggett R. M., Yu D.

Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet)

Methods in Ecology and Evolution

Publishers version: doi:10.1111/2041-210X.13265

Aug 2019

Hall N.

Multilocus Analysis Resolves the European Finch Epidemic Strain of Trichomonas gallinae and Suggests Introgression from Divergent Trichomonads.

Genome Biol Evol

Publishers version: doi:10.1093/gbe/evz164

Jul 2019

Alkhudaydi T., Reynolds D., Griffiths S., Zhou J., De La Iglesia B.

An Exploration of Deep-Learning Based Phenotypic Analysis to Detect Spike Regions in Field Conditions for UK Bread Wheat

Plant Phenomics

Publishers version: doi:10.34133/2019/7368761

Jul 2019

Charalampous T., Kay G. L., Richardson H., Aydin A., Baldan R., Jeanes C., Rae D., Grundy S., Turner D. J., Wain J., Leggett R., Livermore D. M., O'Grady J.

Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection.

Nature Biotechnology

Publishers version: doi:10.1038/s41587-019-0156-5

Jul 2019

Charalampous T., Kay G. L., Richardson H., Aydin A., Baldan R., Jeanes C., Rae D., Grundy S., Turner D. J., Wain J., Leggett R. M., Livermore D. M., O'Grady J.

Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection.

Nature Biotechnology

Publishers version: doi:10.1038/s41587-019-0156-5

Jul 2019

Alrefaei A. F., Low R., Hall N., Jardim R., Dávila A., Gerhold R., John S., Steinbiss S., Cunningham A. A., Lawson B., Bell D., Tyler K.

Multilocus Analysis Resolves the European Finch Epidemic Strain of Trichomonas gallinae and Suggests Introgression from Divergent Trichomonads.

Genome biology and evolution

Publishers version: doi:10.1093/gbe/evz164

Jun 2019

Thanki A., Bian X., Davey R.

TGAC Browser: an open-source genome browser for non-model organisms

bioRxiv

Publishers version: doi:10.1101/677658

Jun 2019

Martin S., Leggett R.

Alvis: a tool for contig and read ALignment VISualisation and chimera detection

bioRxiv

Publishers version: doi:10.1101/663401