Publications.

Jan 2021

Hanley SJ,Pellny TK,De Vega J,Castiblanco V,Arango J,Eastmond PJ,Heslop-Harrison JSP,Mitchell RAC

Allele mining in diverse accessions of tropical grasses to improve forage quality and reduce environmental impact.

Annals of botany

Publishers version: doi:10.1093/aob/mcab101

Dec 2020

Gilroy R,Ravi A,Getino M,Pursley I,Horton D,Alikhan N,Baker D,Gharbi K,Hall N,Watson M,Adriaenssens E,Foster-Nyarko E,Jarju S,Secka A,Antonio M,Oren A,Chaudhuri R,Ragione R,Hildebrand F,Pallen M

A Genomic Census of the Chicken Gut Microbiome using Metagenomics and Culture

https://www.researchsquare.com/article/rs-56027/v3

Publishers version: doi:10.21203/rs.3.rs-56027/v3

Dec 2020

Stentz R,Wegmann U,Guirro M,Bryant W,Ranjit A,Goldson A,Brion A,Gotts K,Booth K,Miquel Clopes A,Jones E,Gunning P,Sudhakar P,Modos D,Brown I,Korcsmaros T,Carding SR

Extracellular vesicles released by the human gut symbiont Bacteroides thetaiotaomicron in the mouse intestine are enriched in a selected range of proteins that influence host cell physiology and metabolism

Research Square

Publishers version: doi:10.21203/rs.3.rs-124947/v1

Dec 2020

Hanley SJ,Pellny TK,De Vega J,Castiblanco V,Arango J,Eastmond PJ,Heslop-Harrison JS,Mitchell RAC

Allele Mining in Diverse Accessions of Urochloa and Megathyrsus spp. Tropical Grasses to Improve Forage Quality and Reduce Environmental Impact

Biorxiv

Publishers version: doi:10.1101/2020.12.09.418087

Dec 2020

Walkowiak S,Gao L,Monat C,Haberer G,Kassa MT,Brinton J,Ramirez-Gonzalez RH,Kolodziej MC,Delorean E,Thambugala D,Klymiuk V,Byrns B,Gundlach H,Bandi V,Siri JN,Nilsen K,Aquino C,Himmelbach A,Copetti D,Ban T,Venturini L,Bevan M,Clavijo B,Koo DH,Ens J,Wiebe K,N'Diaye A,Fritz AK,Gutwin C,Fiebig A,Fosker C,Fu BX,Accinelli GG,Gardner KA,Fradgley N,Gutierrez-Gonzalez J,Halstead-Nussloch G,Hatakeyama M,Koh CS,Deek J,Costamagna AC,Fobert P,Heavens D,Kanamori H,Kawaura K,Kobayashi F,Krasileva K,Kuo T,McKenzie N,Murata K,Nabeka Y,Paape T,Padmarasu S,Percival-Alwyn L,Kagale S,Scholz U,Sese J,Juliana P,Singh R,Shimizu-Inatsugi R,Swarbreck D,Cockram J,Budak H,Tameshige T,Tanaka T,Tsuji H,Wright J,Wu J,Steuernagel B,Small I,Cloutier S,Keeble-Gagnère G,Muehlbauer G,Tibbets J,Nasuda S,Melonek J,Hucl PJ,Sharpe AG,Clark M,Legg E,Bharti A,Langridge P,Hall A,Uauy C,Mascher M,Krattinger SG,Handa H,Shimizu KK,Distelfeld A,Chalmers K,Keller B,Mayer KFX,Poland J,Stein N,McCartney CA,Spannagl M,Wicker T,Pozniak CJ

Multiple wheat genomes reveal global variation in modern breeding.

Nature

Publishers version: doi:10.1038/s41586-020-2961-x

Dec 2020

Everett HE,van Diemen,Aramouni M,Ramsay A,Coward VJ,Pavot V,Canini L,Holzer B,Morgan S,Woolhouse MEJ,Tchilian E,Brookes SM,Brown IH,Charleston B,Gilbert S,Etherington G,Man A,Di Palma F

Vaccines That Reduce Viral Shedding Do Not Prevent Transmission of H1N1 Pandemic 2009 Swine Influenza a Virus Infection to Unvaccinated Pigs.

Journal of virology

Publishers version: doi:10.1128/jvi.01787-20

Dec 2020

Pulford CV,Perez-Sepulveda BM,Canals R,Bevington JA,Bengtsson RJ,Wenner N,Rodwell EV,Kumwenda B,Zhu X,Bennett RJ,Stenhouse GE,Malaka De,Webster HJ,Bengoechea JA,Dumigan A,Tran-Dien A,Prakash R,Banda HC,Alufandika L,Mautanga MP,Bowers-Barnard A,Beliavskaia AY,Predeus AV,Rowe WPM,Darby AC,Hall N,Weill FX,Gordon MA,Feasey NA,Baker KS,Hinton JCD

Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa.

Nature microbiology

Publishers version: doi:10.1038/s41564-020-00836-1

Dec 2020

Zhang H,Ehrenkaufer GM,Hall N,Singh U

Identification of oligo-adenylated small RNAs in the parasite Entamoeba and a potential role for small RNA control.

BMC genomics

Publishers version: doi:10.1186/s12864-020-07275-6

Dec 2020

Sugihara Y,Darkwa K,Yaegashi H,Natsume S,Shimizu M,Abe A,Hirabuchi A,Ito K,Oikawa K,Tamiru-Oli M,Ohta A,Matsumoto R,Agre P,De Koeyer,Pachakkil B,Yamanaka S,Muranaka S,Takagi H,White B,Asiedu R,Innan H,Asfaw A,Adebola P,Terauchi R

Genome analyses reveal the hybrid origin of the staple crop white Guinea yam (Dioscorea rotundata).

Proceedings of the National Academy of Sciences of the United States of America

Publishers version: doi:10.1073/pnas.2015830117

Dec 2020

Bollmann-Giolai A,Giolai M,Heavens D,Macaulay I,Malone J,Clark MD

A low-cost pipeline for soil microbiome profiling.

MicrobiologyOpen

Publishers version: doi:10.1002/mbo3.1133

Dec 2020

Osborne P,Hall LJ,Kronfeld-Schor N,Thybert D,Haerty W

A rather dry subject; investigating the study of arid-associated microbial communities

Environmental Microbiome

Publishers version: doi:10.1186/s40793-020-00367-6

Nov 2020

Woodhouse S,He Z,Woolfenden H,Steuernagel B,Haerty W,Bancroft I,Irwin J,Morris R,Wells R

Validation of a novel associative transcriptomics pipeline in Brassica oleracea: Identifying candidates for vernalisation response

biorXiv

Publishers version: doi:10.1101/2020.11.27.400986

Nov 2020

Kingsley R,Tassinari E,Bawn M,Thilliez G,Charity O,Acton L,Kirkwood M,Petrovska L,Dallman T,Burgess C,Hall N,Duffy G

Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella Typhimurium clone

Microbial Genomics

Publishers version: doi:https://doi.org/10.1099/mgen.0.000456

Nov 2020

A proteomic approach reveals possible molecular mechanisms and roles for endosymbiotic bacteria in begomovirus transmission by whiteflies

GigaScience

Publishers version: doi:10.1093/gigascience/giaa124

Nov 2020

Genereux DP,Serres A,Armstrong J,Johnson J,Marinescu VD,Murén E,Juan D,Bejerano G,Casewell NR,Chemnick LG,Damas J,Di Palma,Diekhans M,Fiddes IT,Garber M,Gladyshev VN,Goodman L,Haerty W,Houck ML,Hubley R,Kivioja T,Koepfli KP,Kuderna LFK,Lander ES,Meadows JRS,Murphy WJ,Nash W,Noh HJ,Nweeia M,Pfenning AR,Pollard KS,Ray DA,Shapiro B,Smit AFA,Springer MS,Steiner CC,Swofford R,Taipale J,Teeling EC,Turner-Maier J,Alfoldi J,Birren B,Ryder OA,Lewin HA,Paten B,Marques-Bonet T,Lindblad-Toh K,Karlsson EK

A comparative genomics multitool for scientific discovery and conservation.

Nature

Publishers version: doi:10.1038/s41586-020-2876-6