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Aug 2018

Singh S., Vikram P., Sehgal D., Burgueño J., Sharma A., Singh S. K., Sansaloni C. P., Joynson R., Brabbs T., Ortiz C., Solis-Moya E., Govindan V., Gupta N., Sidhu H. S., Basandrai A. K., Basandrai D., Ledesma-Ramires L., Suaste-Franco M. P., Fuentes-Dávila G., Moreno J. I., Sonder K., Singh V. K., Singh S., Shokat S., Arif M. A. R., Laghari K. A., Srivastava P., Bhavani S., Kumar S., Pal D., Jaiswal J. P., Kumar U., Chaudhary H. K., Crossa J., Payne T. S., Imtiaz M., Sohu V. S., Singh G. P., Bains N. S., Hall A., Pixley K. V.

Harnessing genetic potential of wheat germplasm banks through impact-oriented-prebreeding for future food and nutritional security.

Scientific reports

Publishers version: doi:10.1038/s41598-018-30667-4

Aug 2018

Billes V., Kovács T., Manzéger A., Lorincz P., Szincsák S., Regos Á., Kulcsár P. I., Korcsmaros T., Lukácsovich T., Hoffmann G., Erdélyi M., Mihály J., Takács-Vellai K., Sass M., Vellai T.

Developmentally regulated autophagy is required for eye formation in Drosophila.

Autophagy

Publishers version: doi:10.1080/15548627.2018.1454569

Jul 2018

Ghosh S., Watson A., Gonzalez O. E., Ramirez Gonzalez R., Yanes L., Mendoza-Suárez M., Simmonds J., Wells R., Rayner T., Green P., Hafeez A., Hayta S., Melton R. E., Steed A., Sarkar A., Carter J., Perkins L., Lord J., Tester M., Osbourn A., Moscou M. J., Nicholson P., Harwood W., Martin C., Domoney C., Uauy C., Hazard B., Wulff B. B. H., Hickey L. T.

Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

bioRxiv

Publishers version: doi:10.1101/369512

Jul 2018

Karasov T. L., Almario J., Friedemann C., Ding W., Giolai M., Heavens D., Kersten S., Lundberg D. S., Neumann M., Regalado J., Neher R. A., Kemen E., Weigel D.

Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales.

Cell host & microbe

Publishers version: doi:10.1016/j.chom.2018.06.011

Jul 2018

Zhou J., Tardieu F., Pridmore T., Doonan J., Reynolds D., Hall N., Griffiths S., Cheng T., Zhu Y., Wang X., Jiang D., Ding Y.

Plant phenomics: history, present status and challenges

Journal of Nanjing Agricultural University

Publishers version: doi:10.7685/jnau.201805100

Jul 2018

Grüning B., Dale R., Sjödin A., Chapman B. A., Rowe J., Tomkins-Tinch C. H., Valieris R., Köster J., Soranzo N.

Bioconda: sustainable and comprehensive software distribution for the life sciences

Nature Methods

Publishers version: doi:10.1038/s41592-018-0046-7

Jul 2018

Johnson R. N., O'Meally D., Chen Z., Etherington G. J., Ho S. Y. W., Nash W. J., Grueber C. E., Cheng Y., Whittington C. M., Dennison S., Peel E., Haerty W., O'Neill R. J., Colgan D., Russell T. L., Alquezar-Planas D. E., Attenbrow V., Bragg J. G., Brandies P. A., Chong A. Y., Deakin J. E., Di Palma F., Duda Z., Eldridge M. D. B., Ewart K. M., Hogg C. J., Frankham G. J., Georges A., Gillett A. K., Govendir M., Greenwood A. D., Hayakawa T., Helgen K. M., Hobbs M., Holleley C. E., Heider T. N., Jones E. A., King A., Madden D., Graves J. A. M., Morris K. M., Neaves L. E., Patel H. R., Polkinghorne A., Renfree M. B., Robin C., Salinas R., Tsangaras K., Waters P. D., Waters S. A., Wright B., Wilkins M. R., Timms P., Belov K.

Adaptation and conservation insights from the koala genome.

Nature Genetics

Publishers version: doi:10.1038/s41588-018-0153-5

Jul 2018

Marques D. A., Jones F. C., Di Palma F., Kingsley D. M., Reimchen T. E.

Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation.

Nature ecology & evolution

Publishers version: doi:10.1038/s41559-018-0581-8

Jun 2018

Grüning B., Chilton J., Köster J., Dale R., Soranzo N., van den Beek M., Goecks J., Backofen R., Nekrutenko A., Taylor J.

Practical computational reproducibility in the life sciences

Cell Systems

Publishers version: doi:10.1016/j.cels.2018.03.014

Jun 2018

Thanki A., Soranzo N., Herrero J., Haerty W., Davey R.

Aequatus: An open-source homology browser

biorxiv

Publishers version: doi:10.1101/055632

Jun 2018

Wu J., Collins S. R. A., Elliston A., Wellner N., Dicks J., Roberts I. N., Waldron K. W.

Release of cell wall phenolic esters during hydrothermal pretreatment of rice husk and rice straw

Biotechnology for Biofuels

Publishers version: doi:10.1186/s13068-018-1157-1

Jun 2018

Batut B., Hiltemann S., Bagnacani A., Baker D., Bhardwaj V., Blank C., Bretaudeau A., Brillet-Guéguen L., Cech M., Chilton J., Clements D., Doppelt-Azeroual O., Erxleben A., Freeberg M. A., Gladman S., Hoogstrate Y., Hotz H. R., Houwaart T., Jagtap P., Larivière D., Le Corguillé G., Manke T., Mareuil F., Ramírez F., Ryan D., Sigloch F. C., Soranzo N., Wolff J., Videm P., Wolfien M., Wubuli A., Yusuf D., Taylor J., Backofen R., Nekrutenko A., Grüning B.

Community-Driven Data Analysis Training for Biology

Cell Systems

Publishers version: doi:10.1016/j.cels.2018.05.012

May 2018

Regoli M., Man A., Gicheva N., Dumont A., Ivory K., Pacini A., Morucci G., Branca J. J. V., Lucattelli M., Santosuosso U., Narbad A., Gulisano M., Bertelli E., Nicoletti C.

Morphological and Functional Characterization of IL-12Rß2 Chain on Intestinal Epithelial Cells: Implications for Local and Systemic Immunoregulation.

Frontiers in immunology

Publishers version: doi:10.3389/fimmu.2018.01177

May 2018

Afgan E., Baker D., Batut B., van den Beek M., Bouvier D., ČEch M., Chilton J., Clements D., Coraor N., Grüning B. A., Guerler A., Hillman-Jackson J., Hiltemann S., Jalili V., Rasche H., Soranzo N., Goecks J., Taylor J., Nekrutenko A., Blankenberg D.

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

Nucleic Acids Research

Publishers version: doi:10.1093/nar/gky379

May 2018

Ran Y., Patron N., Kay P., Wong D., Buchanan M., Cao Y. Y., Sawbridge T., Davies J. P., Mason J., Webb S. R., Spangenberg G., Ainley W. M., Walsh T. A., Hayden M. J.

Zinc-Finger Nuclease (ZFN)-mediated precision genome editing of an endogenous gene in hexaploid bread wheat (Triticum aestivum) using a DNA repair template.

Plant Biotechnology Journal

Publishers version: doi:10.1111/pbi.12941