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Simulating systems genetics data with SysGenSIM
From Knockouts to Networks: Establishing Direct Cause-Effect Relationships through Graph Analysis
Determining the distance to monotonicity of a biological network: a graph-theoretical approach
ERNEST: a toolbox for chemical reaction network theory
mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle
Modeling the genome-wide transient response to stimuli in yeast: Adaptation through integral feedback
Origin of Co-Expression Patterns in E.coli and S.cerevisiae Emerging from Reverse Engineering Algorithms
Discerning static and causal interactions in genome-wide reverse engineering problems
LINEAR AND NONLINEAR METHODS FOR GENE REGULATORY NETWORK INFERENCE
Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data
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