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Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach
A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive bioinformatics in Galaxy
Simulation of the Benchmark Datasets
Wisdom of crowds for robust gene network inference
Decompositions of large-scale biological systems based on dynamical properties
Simulating systems genetics data with SysGenSIM
From Knockouts to Networks: Establishing Direct Cause-Effect Relationships through Graph Analysis
Determining the distance to monotonicity of a biological network: a graph-theoretical approach
ERNEST: a toolbox for chemical reaction network theory
mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle
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