 
  Biography
Karim leads the Technical Genomics Group, which underpins the high-performance sequencing platform and NBRI in Transformative Genomics, providing EI researchers and the wider UK bioscience community with access to cutting-edge expertise and the latest technology platforms.
Karim is a biologist with over two decades of experience in genomics and a passion for scientific discovery and innovation. He has been at the forefront of next-generation sequencing since the early days of the technology, shaping the development of Edinburgh Genomics as a major NGS facility at the University of Edinburgh before joining EI in 2018. He has collaborated on over 50 publications across the breadth of NGS applications and shared his knowledge of the field with others through numerous workshops and courses.
Karim did his PhD at the French National Institute for Agricultural Research (INRA) in Jouy-en-Josas (France), investigating complex patterns of evolution in the genome of polyploid fish in the salmon family. After completing his PhD in 2001, he moved to the University of Guelph (Canada) for a postdoc on the genetic basis of production traits in aquaculture fish. He returned to Europe in 2006, holding a Kelvin-Smith Fellowship in aquatic epidemiology and immunogenomics at the University of Glasgow before joining the University of Edinburgh in 2009, where he held several management positions within Edinburgh Genomics while teaching bioinformatics as a Senior Lecturer.
Karim has a soft spot for fish and other aquatic creatures but enjoys working on any organism with intriguing biology. He keeps a close watch on technology developments in the field and is always happy to discuss new ideas.
Projects
Publications
Related reading.
 
  New perspectives on human health and biodiversity using cell atlases
 
  Mapping cellular dynamics with the lichen cell atlas
 
  Pangenome annotation opens up a multiverse of genes
 
  Integrating single-cell and spatial genomics across the tree of life
 
  Every cell tells a story: single-cell analysis in forensic science
 
  Examining the science of evidence-based policy
 
  Why gene editing is vital to protect nature
 
  New DNA on the block: Genomics expert to lead our pioneering sequencing
 
  New fellowship launched to embed FAIR data across the UK life sciences
 
  New wheat diversity discovery could provide an urgently-needed solution to global food security
 
  Single-cell genomics reveals hidden bacterial threats in Amoeba
 
  New project explores potential of soil microbes to achieve UK net zero goals
 
  ELIXIR-UK awarded strategic funding to support UK life sciences data community
 
  Scientists look to biotechnology to improve crop resilience and nutritional value
 
   
 
   
   
   
   
   
  
